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Recent Replies
Comment: Generating a Bed file from a Fasta file
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Pierre Lindenbaum
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there is not enough information. you have to show us the command you used, a snapshot of your fasta...
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That's great. I will test it and let you know how it goes. Thank you.
Comment: Generating a Bed file from a Fasta file
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pirku
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I tried running BLAT, but the output looks like this. Seems like none of the sequences were mapped/aligned
match mis- rep. N's Q gap…
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You could try and look up a snapshot of the page(s) - https://web.archive.org/
Which specific best practice are you referring to?
https:/…
Comment: Generating a Bed file from a Fasta file
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you could run blast or any other aligner to get the coordinate(s) of your fasta on a reference genome.
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If it cans help,
I got the same error message :
There were errors in the input file (listed above). According to
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I am not sure whether it will speedup the conversion but you can give it a try.
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The timing for your question is excellent. The fix was released yesterday.
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> I observed that it doesn't phase genotypes labeled as 0/0
How could such a genotype even be phased?
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Well-noted however just wondering what you me by GFF being shorter. Thank you![See the screeshot snap of the gff file][1]
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I know illumina will only give me high-quality contigs.
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Hi, Thank you for a detailed responce.
Let me add some more informations.
Long-Read is ~75X coverage.
Short-Read is ~100X coverage.
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The best is to prune the tree and also the bootstrap trees and afterwards re-assign the bootstrap values to the tree. The bootstrap values …
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Here's a more neat version of the plot generated while writing my dissertation:
![enter image description here][1]
[1]: https://raw.gi…
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what a pity...
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