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1,000 results • Page
2 of 20
Sort: replies
Rank
Views
Votes
Replies
3
votes
12
replies
1.0k
views
why 99% reads failed to align in mir-seq analysis?
Fastqc
bowtie1
miRNA-seq
alignment
differential-expression-analysis
4 months ago by
mohammadhassanj
▴ 260
3
votes
12
replies
613
views
struggle to get fasta files from ucsc goldenPath
ucsc
getfasta
fasta
7 weeks ago by
Lila M
★ 1.2k
3
votes
12
replies
3.1k
views
What is NCBI Gene ID, where to find it and how to convert to entrez ID?
RNA-Seq
updated 11 months ago by
Pegasus
▴ 100 • written 4.6 years ago by
mnazir
▴ 10
2
votes
12
replies
1.6k
views
scrna seq analysis - doublets
scrna
seq
code
r
updated 10 months ago by
Nitin Narwade
★ 1.6k • written 10 months ago by
bioinformatics
▴ 40
2
votes
12
replies
921
views
Nanopore data filtering using fastp
fastp
nanopore
7 weeks ago by
emilydolivo97
▴ 10
4
votes
12
replies
7.9k
views
6 follow
BWA error: no ID within the read group line
bwa
readgroups
RG
parallel
updated 3 months ago by
mgdrnl
▴ 10 • written 3.4 years ago by
whb
▴ 60
7
votes
12
replies
1.7k
views
How to pass arguments in a bash script to perform read alignment to the reference?
exome
bwa
bash
updated 6 months ago by
Ram
43k • written 4.3 years ago by
Karma
▴ 310
2
votes
11
replies
5.3k
views
How long it takes to run repeat masker on a full genome
Assembly
updated 4 months ago by
e.r.zakiev
▴ 210 • written 7.8 years ago by
CAnna
▴ 20
2
votes
11
replies
854
views
Reference Guided genome assembly
tabix
updated 12 weeks ago by
Michael
54k • written 12 weeks ago by
sainavyav22
• 0
5
votes
11
replies
1.0k
views
Make heatmap for RNA-seq with non replicate
RNA-seq
updated 9 months ago by
Ram
43k • written 9 months ago by
Chris
▴ 280
4
votes
11
replies
716
views
Remove X in row name with only number
GSVA
updated 3 months ago by
Ram
43k • written 3 months ago by
Chris
▴ 280
1
vote
11
replies
1.2k
views
Quantification after transcriptome assembly with Trinity
De-novo-transcriptome-assembly
Trinity
RNA-seq-analysis
updated 7 months ago by
GenoMax
142k • written 8 months ago by
langziv
▴ 50
0
votes
11
replies
860
views
Filtering VCF based on codon-transcript
vcf
bcftools
updated 9 weeks ago by
barslmn
★ 2.2k • written 10 weeks ago by
avelarbio46
▴ 30
0
votes
11
replies
2.3k
views
i want to convert .ht2 files into FASTA file
GATK
HISAT2
FASTA
updated 11 months ago by
Ram
43k • written 5.0 years ago by
saumya.sharma1509
• 0
0
votes
11
replies
1.7k
views
count file having zero
RNA-Seq
next-gen
alignment
updated 11 months ago by
Ram
43k • written 5.3 years ago by
BioBaby
▴ 20
2
votes
11
replies
1.1k
views
Data preparation for a ML model
machine-learning
RNA-Seq
R
python
biomarkers
5 months ago by
sil_bioinfo
▴ 40
5
votes
11
replies
1.4k
views
Interpret IGV output inversion
variant-calling
IGV
alignment
updated 9 months ago by
cmdcolin
★ 3.8k • written 9 months ago by
pablo
▴ 300
4
votes
11
replies
1.7k
views
Check Strandedness
Check_Strandedness
how_are_we_stranded_here
leafcutter
bash
updated 7 months ago by
Brian Bushnell
20k • written 9 months ago by
Y
• 0
0
votes
11
replies
734
views
How do I use the STARSolo aligner with MGI DNBelab C series HT scRNAseq libraries?
STARSolo
scRNA-seq
STAR
snRNA-seq
MGI
25 days ago by
atowns21
• 0
0
votes
11
replies
1.2k
views
Normalization for microarrays >1000+ samples?
microarray
normalization
oligo
8 months ago by
evmae
• 0
4
votes
11
replies
1.9k
views
PCA WITH PLINK
PLINK
updated 9 months ago by
Kevin Blighe
88k • written 9 months ago by
Michelle Guerra
• 0
6
votes
10
replies
1.7k
views
Integration of Microarray datasets with different platforms and biological groups
limma
microarray
DEA
batch-effect
updated 4 weeks ago by
Ram
43k • written 4.7 years ago by
asalimih
▴ 60
2
votes
10
replies
1.1k
views
HGVS Nomenclature of Multiple Indels found in Cis
Nomenclature
HGVS
updated 21 hours ago by
Ram
43k • written 5 months ago by
LauferVA
4.2k
0
votes
10
replies
737
views
Nextflow ERROR : Timeout waiting for connection from pool
nextflow
7 weeks ago by
dzisis1986
▴ 70
0
votes
10
replies
651
views
Low mapping rate with Salmon
RNA-seq
Salmon
Quantification
updated 21 days ago by
i.sudbery
19k • written 28 days ago by
Patadu94
• 0
8
votes
10
replies
840
views
bash script
whole-genome-sequencing
updated 5 weeks ago by
Ram
43k • written 6 weeks ago by
bestone
▴ 30
1
vote
10
replies
1.8k
views
Deepvariant variant calling by singularity
deepvariant
singularity
conda
docker
updated 8 months ago by
jeffhsu3
• 0 • written 10 months ago by
fra.r.silvestro
▴ 10
2
votes
10
replies
939
views
Only one read per run - Trying to use CellRangerv7
Fastq
CellRanger
updated 7 weeks ago by
Ram
43k • written 3 months ago by
Sky
▴ 10
1
vote
10
replies
1.1k
views
file conversion from gtf to gff3 for evidence modeler
gff3
stringtie
gtf
7 months ago by
rj.rezwan
• 0
2
votes
10
replies
3.2k
views
6 follow
Split plink files by a number of SNPs
GWAS
SNP
plink
updated 7 months ago by
Raygozak
★ 1.4k • written 5.8 years ago by
kakukeshi
▴ 80
1
vote
10
replies
3.1k
views
How to specify/calculate subject coverage of the alignment (alignment of query[protein sequence] and subject[Nucleotide sequence]) in tBLASTn?
alignment
BLAST
tBLASTn
updated 12 months ago by
Ram
43k • written 5.2 years ago by
Kumar
▴ 120
1
vote
10
replies
1.2k
views
Do monoclonal antibodies have a blocking effect?
block
antibody
offtopic
updated 9 months ago by
Jeremy
▴ 910 • written 9 months ago by
jinyu
▴ 10
5
votes
10
replies
883
views
Error when viewing a bam file
samtools
updated 11 months ago by
Ram
43k • written 12 months ago by
Chris
▴ 280
0
votes
10
replies
963
views
Problem running scPred
scPred
scPredict
updated 9 weeks ago by
Ram
43k • written 4 months ago by
Nitin
• 0
10
votes
10
replies
2.1k
views
PyWGCNA
WGCNA
11 months ago by
yoshifumimiya
▴ 50
0
votes
10
replies
1.1k
views
ONT Raw Read Sequencing Pipeline
remora
dorado
ONT
Basecall
4 months ago by
turcoa1
• 0
5
votes
10
replies
1.3k
views
the distribution of log2Fc and t value are not similar for bulk RNA-seq
decoupleR
RNA-seq
9 months ago by
alwayshope
▴ 40
1
vote
10
replies
1.2k
views
Coverage histogram query
Alignment
9 months ago by
prasundutta87
▴ 660
2
votes
10
replies
3.5k
views
RepeatMasker: createLib() Error
RepeatMasker
updated 4 weeks ago by
Ram
43k • written 7.5 years ago by
linda
• 0
3
votes
10
replies
1.3k
views
STAR index not working
STAR
RNA-Seq
8 months ago by
camillab.
▴ 160
14
votes
10
replies
1.0k
views
How to remove center population from seurat cluster
single-cell
5 months ago by
synat.keam
▴ 100
1
vote
9
replies
1.5k
views
blast retrieves "N/A" for taxonomic data
blast
blastn
updated 10 weeks ago by
flavianegrete
• 0 • written 3.5 years ago by
langziv
▴ 50
0
votes
9
replies
1.5k
views
Samtools sam to bam error
samtools
updated 6 months ago by
Andrea
• 0 • written 2.1 years ago by
kb_93
▴ 10
4
votes
9
replies
1.3k
views
Snakemake issue with wrappers
Python
Snakemake
6 months ago by
Begonia_pavonina
▴ 150
0
votes
9
replies
5.4k
views
Calculating FPKM and TPM by hand from htseq-count output?
RNA-Seq
rna-seq
htseq
FPKM
TPM
updated 9 months ago by
ATpoint
82k • written 5.1 years ago by
Joel Wallenius
▴ 210
1
vote
9
replies
589
views
miRNA alignment with Bowtie2
bowtie2
9 weeks ago by
Chironex
▴ 40
0
votes
9
replies
1.8k
views
WCGNA to Cytoscape
wgcna
cytoscape
rna-seq
updated 3 months ago by
Ram
43k • written 3.8 years ago by
ovariohisterectomia
▴ 40
3
votes
9
replies
1.7k
views
How to get negative training set if I don't know what constitutes negative?
machine-learning
dna-sequence
blast
updated 6 months ago by
Ram
43k • written 7.7 years ago by
nafizh
• 0
0
votes
9
replies
1.5k
views
kinannote software installation problems
kinannote
updated 12 days ago by
Emanoelle
• 0 • written 5.8 years ago by
Elizabeth
▴ 30
0
votes
9
replies
1.2k
views
Normalization across different single cell RNAseq experimetns
global-scaling
single-cell
scRNA-seq
batch-effect
updated 4 weeks ago by
Ram
43k • written 4.0 years ago by
jmah
▴ 30
1,000 results • Page
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The timing for your question is excellent. The fix was released yesterday.
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Well-noted however just wondering what you me by GFF being shorter. Thank you![See the screeshot snap of the gff file][1] [1]: /media/i…
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I know illumina will only give me high-quality contigs. the samples which are to be sequenced with Long_Short read sequence will be used as…
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if don't work try binding the stats without group. stat_data4 <- data4.ts %>% ungroup() %>% t.test(data = ., value ~ Cond…
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