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News: Training in Metagenomics Data Analysis @NIH, USA, Nov 14 - 17, 2017
metagenomics microbiome training
updated 13 months ago by 43k • written 7.6 years ago by ▴ 140
10
votes
4
replies
1.3k
views
News: RNA-Seq Data Analysis Workshop - Join us in Berlin, Germany from March 27-30, 2023!
NGS transcriptomics workshop
updated 14 months ago by ▴ 30 • written 15 months ago by 11k
12
votes
4
replies
2.1k
views
News: #NGSchool2018 summer school in bioinformatics
NGSchool Personalised-Medicine Nanopore
updated 12 months ago by 43k • written 6.0 years ago by ▴ 290
15
votes
4
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4.7k
views
News: Workshop: Genomic Data Visualization and Interpretation (Berlin, Germany)
dataviz GenVisR next-gen R
updated 13 months ago by 43k • written 7.2 years ago by ★ 2.5k
6
votes
4
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1.2k
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News: Upcoming online training courses
Python R
2.8 years ago by carlopecoraro2 ★ 2.5k
4
votes
4
replies
1.7k
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News: VCFclin working group
vcfclin
updated 14 months ago by 43k • written 10.0 years ago by ▴ 30
4
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4
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2.9k
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News: Join The Dnanexus Developer Program
api cloud
updated 14 months ago by 43k • written 10.9 years ago by ▴ 30
8
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4
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2.0k
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News: supporting vg users on biostars
variation-graph genome vg vgteam
updated 11 months ago by 43k • written 4.7 years ago by ★ 2.4k
2
votes
4
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1.2k
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News: Course ONLINE - RNAseq data analysis with R and Bioconductor (15-19 June)
R RNA-seq Bioconductor
updated 11 months ago by 43k • written 4.0 years ago by ★ 2.5k
2
votes
4
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1.5k
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News: Online training - Snakemake: Reproducible and Scalable Bioinformatic Workflows
Snakemake Pipeline
2.5 years ago by carlopecoraro2 ★ 2.5k
6
votes
4
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1.3k
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News: Course online - Comparative Genomics
assembly genome next-gen alignment
updated 11 months ago by 43k • written 4.1 years ago by ★ 2.5k
10
votes
4
replies
1.0k
views
News: Good morning
good morning
updated 20 months ago by 100k • written 20 months ago by 88k
15
votes
4
replies
2.6k
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News: Call For Nominations: 2013 Benjamin Franklin Award
benjamin-franklin-award award
updated 14 months ago by 43k • written 11.3 years ago by 161k
0
votes
4
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1.0k
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News: Pan-Structural Variation hackathon in the Cloud!
SV sequencing
updated 11 months ago by 43k • written 4.3 years ago by 9.7k
10
votes
4
replies
2.7k
views
News: Ensembl 77 is out
ensembl
updated 2.3 years ago by 43k • written 9.6 years ago by 23k
6
votes
4
replies
4.3k
views
News: awesome-single-cell: a list of open-source single-cell analysis software and workshop materials
single-cell RNA-Seq
updated 13 months ago by 43k • written 7.9 years ago by 26k
2
votes
3
replies
2.1k
views
News: PDX Models: Tumor-stroma interaction
transcriptome pdx R ChIP-Seq
updated 12 months ago by 43k • written 6.8 years ago by ▴ 70
2
votes
3
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725
views
News: NCBI Comparative Genome Viewer now allows searches for genes across aligned assemblies
Browser NCBI Alignments Genome
17 months ago by PeterC_NCBI ▴ 410
0
votes
3
replies
918
views
News: NCBI update complete. Aspera users please update your client.
NCBI Submissions GenBank
15 months ago by PeterC_NCBI ▴ 410
4
votes
3
replies
1.1k
views
News: You may need to cleanup duplicate NCBI BLAST nt database volumes on your system
databases NCBI BLAST
8 months ago by PeterC_NCBI ▴ 410
0
votes
3
replies
2.4k
views
News: Eukaryotic Metabarcoding workshop
next-gen blast alignment
updated 13 months ago by 43k • written 7.5 years ago by ★ 2.5k
0
votes
3
replies
1.4k
views
News: :: FINAL CALL :: A Practical Introduction to NGS Data Analysis (Nov 29 - Dec 1, 2023 in Munich, Germany) - only 2 seats left
DNA-Seq NGS RNA-Seq Workshop
6 months ago by David Langenberger 11k
5
votes
3
replies
1.6k
views
News: Bioinfo-Core Conference Call, October 17, 2017 (11 am EDT USA, local times around world)
bioinfo-core
updated 14 months ago by 43k • written 6.7 years ago by 142k
7
votes
3
replies
4.6k
views
News: Pathway Commons 2 - Search And Visualize Public Biological Pathway Information. Single Point Of Access.
api cytoscape
updated 14 months ago by 43k • written 10.5 years ago by ★ 1.2k
4
votes
3
replies
1.9k
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News: Proteomics and Genomics Submit your Research Journals
Research Genomics Journals Proteomics
updated 17 months ago by 43k • written 8.9 years ago by • 0
2
votes
3
replies
1.7k
views
News: GCCBOSC 2018: A Bioinformatics Community Conference Call for Abstracts
Galaxy-Community-Conference BOSC GCC
updated 12 months ago by 43k • written 6.2 years ago by ★ 2.2k
18
votes
3
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2.5k
views
News: LAST CALL: Next-Generation Sequencing Data Analysis: A Practical Introduction (Frankfurt, Germany) - 2 seats left
DNA-Seq NGS Workshop Variant-Calling
updated 22 months ago by 43k • written 7.2 years ago by 11k
1
vote
3
replies
1.2k
views
News: 4th Berlin Summer School in NGS Data Analysis - October 5-9, 2020
NGS RNA-Seq DNA-Seq
updated 11 months ago by 43k • written 4.2 years ago by 11k
3
votes
3
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3.9k
views
News: A Tale Of Next Generation Sequencing Platforms: Ion Torrent, Pacific Biosciences And Illumina Miseq
sequencing
updated 15 months ago by 43k • written 11.7 years ago by 100k
7
votes
3
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3.9k
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News: Visualizing genomic data: techniques and challenges. Our interview with Dr. Malachi Griffith, Dr. Obi Griffith and Mr. Zachary Skidmore (The Griffith…
R RNA-Seq genome NGSdata
updated 12 months ago by 43k • written 6.9 years ago by ★ 2.5k
2
votes
3
replies
3.1k
views
News: Summer Course On Analyzing Next-Generation Sequencing Data, June 10-20, Kellog Biological Station, Michigan State University
education
updated 14 months ago by 43k • written 11.3 years ago by 100k
8
votes
3
replies
1.8k
views
News: Impact of outdated gene annotations on pathway enrichment analysis
pathway-enrichment gene-ontology david go
updated 13 months ago by 43k • written 7.6 years ago by 5.1k
0
votes
3
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1.0k
views
News: EMBO | EMBL Symposium: Seeing is Believing - Imaging the Molecular Processes of Life
image-analysis
updated 11 months ago by 43k • written 5.5 years ago by ▴ 10
7
votes
3
replies
1.9k
views
News: New NCBI Datasets home and documentation pages provide easier access
ncbi gene SARS-CoV-2 genome
updated 3.1 years ago by 100k • written 3.1 years ago by ▴ 50
0
votes
3
replies
2.3k
views
News: Bioinformatics National Certification Examination (BINC)
BINC
updated 13 months ago by 43k • written 8.0 years ago by • 0
12
votes
3
replies
2.5k
views
News: Google Summer of Code and Open Bioinformatics Foundation is looking for students
GSoC open-source
updated 13 months ago by 43k • written 8.2 years ago by 8.5k
0
votes
3
replies
1.3k
views
News: Less Than One Month Remaining until the Submission Deadline for Phase 1 of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge!
oncopanel indel-calling
updated 17 months ago by 43k • written 23 months ago by ▴ 10
2
votes
3
replies
1.4k
views
News: Bio-On-Magnetic-Beads (BOMB): Open platform for high-throughput nucleic acid extraction and manipulation
rna-extraction dna-extraction rna-seq
updated 11 months ago by 43k • written 5.7 years ago by ▴ 20
4
votes
3
replies
3.3k
views
News: CAFE v4.0 available
phylogenetics CAFE
updated 12 months ago by 43k • written 7.2 years ago by ▴ 150
22
votes
3
replies
3.0k
views
News: Biostar: 10,000 Question Milestone
meta
updated 14 months ago by 43k • written 11.0 years ago by 100k
0
votes
3
replies
1.1k
views
News: Nvidia Clara Parabricks is FREE for R&D
nvidia workflow gpu
updated 17 months ago by 2.8k • written 17 months ago by 161k
1
vote
3
replies
939
views
News: NCBI BLAST ClusteredNR database now available for blastx and PSI-BLAST searches
PSI-BLAST blastx BLAST NCBI ClusteredNR
16 months ago by PeterC_NCBI ▴ 410
4
votes
3
replies
3.2k
views
News: -max_target_seqs 1 in NCBI standalone BLAST does not do what you think it does
blast
updated 11 months ago by 43k • written 5.6 years ago by 11k
6
votes
3
replies
2.5k
views
News: Become a Professional Biinformatician in NGS, Microarray in very fair price. Register for ArrayGen training program as soon as possible to get good a…
ChIP-Seq next-gen RNA-Seq
updated 13 months ago by 43k • written 7.3 years ago by • 0
5
votes
3
replies
1.5k
views
News: Top GitHub repos for biomedicine
open-source software GitHub
updated 11 months ago by 43k • written 5.4 years ago by ▴ 50
4
votes
3
replies
1.9k
views
News: Boston Genomics Hackathon (facilitated by NCBI)
NCBI RNA-Seq DNA-seq hackathon
updated 13 months ago by 43k • written 8.2 years ago by ▴ 330
4
votes
3
replies
2.3k
views
News: India Recently Started Personal Genome Profiling, Commercially.
genome-profiling
updated 14 months ago by 43k • written 11.0 years ago by ▴ 1000
5
votes
3
replies
2.1k
views
News: Nhgri Meeting About Human Variation Analysis Live Streaming [Now Done]
next-gen exome variation
updated 15 months ago by 43k • written 11.7 years ago by 11k
3
votes
3
replies
2.3k
views
News: Innocentive Challenge: Identify Organisms From A Stream Of Dna Sequences And Get $1,000,000
ngs
updated 14 months ago by 43k • written 11.1 years ago by ▴ 830
3
votes
3
replies
1.2k
views
News: NCBI's IgBLAST version 1.21.0 is now available
IgBLAST BLAST T-Cell NCBI receptors
12 months ago by PeterC_NCBI ▴ 410
1,000 results • Page 3 of 20
Recent Votes
constructing pangenome through psvcp
Differential Expression with limma: Contrast and Design Matrix, combinatorial approach valid?
Differential Expression with limma: Contrast and Design Matrix, combinatorial approach valid?
Answer: RNAseq coverage vs depth for transcript isoform expression?
Answer: ChatGPT optimized for bioinformatics questions
Comment: ChatGPT optimized for bioinformatics questions
C: How can I perform Differential expression analysis with just one control and one
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Comment: constructing pangenome through psvcp by analyst ▴ 50
Fixed the issue by updating nucmer version.
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU by GenoMax 142k
Can you create a small test database (`makeblastdb`) from your query file and try to run the search against the same file and see if that w…
Comment: calculating genomic coverage/ base overlap in R by 1769mkc ★ 1.2k
you can `dput(head(df)` for the both the data frame so that other can test for possible solutions
Comment: Broad and Narrow peaks by ATpoint 82k
What is your question? It's unclear.
Comment: Help with Biopython for Beginner by Joe 21k
One question before offering more solutions: are you trying to learn Python with this as an example problem, or are you trying to find the …
Answer: RNAseq coverage vs depth for transcript isoform expression? by Gordon Smyth ★ 7.2k
See the exploration of isoform precision vs read length and sequencing depth in our paper: https://doi.org/10.1093/nar/gkad1167. Table 1 o…
Comment: How to handle duplicated genes in TCGA data? by txema.heredia ▴ 130
Why does the tool require gene symbols and not ensembl ids? Is it retrieving information from somewhere else? If so, your best bet is to fi…
Comment: how to treat the replicates while performing WGCNA by mavy ▴ 10
Thank you so much for your response . Really appreciate it. I will try the way you mentioned and will get back if I have any query
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU by hophuquy0944 • 0
i have the same error, i used high performance computer, here is my code to set memory. srun --nodes=1 --ntasks=1 --cpus-per-task=24 -…
Comment: Overlapping Ranges within Granges object by Alex Reynolds 35k
Yes, `bedmap` will perform operations on one or two BED files.
Comment: B allele frequency (BAF) by aidangcruickshank ▴ 10
Apologies for resurrecting this post, but any idea what that functions "regions" paramater takes? Would it be a GRanges object? The documen…
Comment: How to handle duplicated genes in TCGA data? by Ngrin • 0
Thanks @txema.heredia.The tool I am going to use only accepts gene symbols. This is the reason. So I cannot use ENS IDs.
Answer: Design for complex RNA-Seq experiment using Deseq2 by swbarnes2 14k
This is a rather small experiment, I don't know that you can establish a meaningful baseline for each patient with a single pre sample, and…
Comment: GG Sankey plot by LauferVA 4.2k
@bk11 i changed this comment to an answer. if you disagree please let me know. thanks for sharing your knowledge. VAL
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation by hannes.bongartz • 0
Thanks for the input. Unfortunately, that didn't help either. I appreciate any other tips. Thank you
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