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1,000 results • Page
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Sort: Rank
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Votes
Replies
5
votes
4
replies
1.4k
views
Forum:
Best BAM viewer in 2022
sam
bam
updated 11 months ago by
Ram
44k • written 18 months ago by
Cornelius
▴ 70
1.2k
votes
206
replies
60k
views
108 follow
Forum:
What Are The Most Common Stupid Mistakes In Bioinformatics?
software
updated 11 months ago by
Raony Guimarães
★ 1.4k • written 13.1 years ago by
Jeremy Leipzig
22k
15
votes
13
replies
4.3k
views
8 follow
Forum:
Does a PhD or work experience set you up better to do bioinformatics work in industry?
advice
industry
phd
updated 4 months ago by
benformatics
3.9k • written 18 months ago by
buhbs
▴ 30
0
votes
2
replies
1.0k
views
Forum:
Best Phd Programs in Usa ( Computational Biology)
computational-biology
drug-design
updated 17 months ago by
Ram
44k • written 19 months ago by
AleLs
• 0
4
votes
5
replies
1.4k
views
6 follow
Forum:
Which Bioinformatics Master's degree is better?
career
masters
updated 12 months ago by
Ram
44k • written 18 months ago by
stelakarayani7
• 0
2
votes
1
reply
884
views
Forum:
Package is not available (for R version XXX)? Manually download and install R packages
installation
package
R
updated 16 months ago by
colindaven
6.4k • written 19 months ago by
JC
▴ 30
3
votes
6
replies
1.1k
views
Forum:
How to become a moderator and other ways of contributing to Biostars
meta
biostars
updated 12 months ago by
Ram
44k • written 19 months ago by
iraun
6.2k
2
votes
3
replies
964
views
Forum:
Experiences with different cloud computing resources / providers
cloud
pipeline
rna-seq
alignment
updated 20 months ago by
Jeremy Leipzig
22k • written 20 months ago by
mjd79
▴ 10
19
votes
13
replies
2.7k
views
8 follow
Forum:
Can bioinformatics Phds be completely or almost completely done remotely?
PhD
updated 20 months ago by
Rob
6.6k • written 20 months ago by
tsomakiank
▴ 40
8
votes
13
replies
2.9k
views
8 follow
Forum:
Commercial software for genomics / NGS / bioinformatics
NGS
software
genomics
updated 20 months ago by
artem barski
• 0 • written 20 months ago by
liorglic
★ 1.4k
4
votes
4
replies
1.4k
views
Forum:
Bioinformatics analogies
Bioinformatics
updated 20 months ago by
Istvan Albert
100k • written 20 months ago by
melissachua90
▴ 70
2
votes
4
replies
1.2k
views
Forum:
Is low N in-vivo research a blind spot for RNA-seq?
statistics
metascience
power
sample-size
updated 14 months ago by
Ram
44k • written 21 months ago by
telroyjatter
▴ 230
2
votes
4
replies
1.0k
views
Forum:
strand specific data
strand
DNA
RNA
specific
coding
21 months ago by
upasana
• 0
3
votes
0
replies
833
views
Forum:
Let's build a list of Drug Databases including Tyrosine Kinase Inhibitors: Update 1
pharmacology
RTK
IC50
TKI
database
21 months ago by
LauferVA
4.2k
7
votes
14
replies
2.5k
views
7 follow
Forum:
Why isn't GWAS used in oncology?
gwas
association
oncology
studies
somatic
cancer
updated 21 months ago by
LChart
3.9k • written 21 months ago by
Kermit
▴ 90
4
votes
4
replies
1.4k
views
Forum:
Cloud Computing Services available?
resources
Cloud-Computing
updated 17 months ago by
Ram
44k • written 22 months ago by
carlopecoraro2
★ 2.5k
2
votes
7
replies
1.3k
views
Forum:
Build a Visual Analytic App for Rna-seq data [Ideas Accepted]
R
plot
rna-seq
count
updated 22 months ago by
Ram
44k • written 22 months ago by
ali
▴ 20
6
votes
3
replies
2.3k
views
Forum:
Best formats for storing large amounts of data for random access
file-formats
databases
updated 22 months ago by
Matthias Zepper
4.6k • written 22 months ago by
i.sudbery
19k
0
votes
1
reply
641
views
Forum:
Add an intercept column to a bed file
plink
intercept
bed
updated 22 months ago by
ATpoint
82k • written 22 months ago by
kai.yang2
• 0
4
votes
2
replies
1.9k
views
Forum:
Best resource for getting a person with a Math/Comp Sci background the right amount of Biology knowledge
biology
teaching
updated 17 months ago by
Ram
44k • written 22 months ago by
LauferVA
4.2k
0
votes
0
replies
756
views
Forum:
Normalization of ChIP-seq _ Spikein normalization + RPGC
ChIP-seq
normalization
RPGC
Spikein
Normalization
22 months ago by
goddy93
• 0
3
votes
1
reply
706
views
Forum:
Would an automated NGS analytics platform help research?
ngs
data-analysis
updated 22 months ago by
Ram
44k • written 22 months ago by
Mandar Sahasrabuddhe
• 0
5
votes
2
replies
1.7k
views
Forum:
Skills for industry career in bioinformatics
industry
updated 22 months ago by
rpolicastro
13k • written 22 months ago by
m.engalla
▴ 10
9
votes
6
replies
1.3k
views
Forum:
Programming languages in industry
programming
language
updated 22 months ago by
Medhat
9.7k • written 22 months ago by
m.monikus
▴ 30
2
votes
6
replies
1.3k
views
Forum:
Getting the best of RNA-Seq
RNA-Seq
isoform
gene
expression
23 months ago by
Antonio R. Franco
★ 5.1k
1
vote
0
replies
820
views
Forum:
Not all Over Representation Analyses are the same!
clusterProfiler
Analysis
fisher
hypergeometric
ORA
Pathway
23 months ago by
Francesco
▴ 20
3
votes
2
replies
869
views
Forum:
From protein-protein interaction networks to..
workflow
computational
knowledge
limitations
updated 11 months ago by
Ram
44k • written 23 months ago by
BioInfoBeginner
▴ 50
0
votes
0
replies
766
views
Forum:
Best practices for merging vcfs with different positions + different samples?
vcf
bcftools
genotypes
updated 17 months ago by
Ram
44k • written 23 months ago by
pabe
▴ 30
24
votes
6
replies
5.0k
views
6 follow
Forum:
Awk in Bioinformatics
perl
awk
shell
updated 17 months ago by
Ram
44k • written 5.7 years ago by
Shicheng Guo
★ 9.4k
7
votes
8
replies
1.6k
views
Forum:
Can we lock posts related to merging vcf files?
vcf
updated 17 months ago by
Ram
44k • written 24 months ago by
4galaxy77
2.8k
0
votes
0
replies
654
views
Forum:
Bioinformatics for understanding cancer and other diseases
cancer
omics
updated 17 months ago by
Ram
44k • written 23 months ago by
pixie@bioinfo
★ 1.5k
1
vote
3
replies
2.6k
views
Forum:
What counts as a valid biological replicate in single cell RNAseq?
statistics
biological
replicates
scRNA-seq
updated 24 months ago by
benformatics
3.9k • written 24 months ago by
david.ferenbach
• 0
3
votes
3
replies
957
views
Forum:
Looking for a PostDoc position in ML-heavy medical bioinformatics in Germany
Germany
PostDoc
updated 24 months ago by
Jean-Karim Heriche
27k • written 24 months ago by
German.M.Demidov
★ 2.9k
0
votes
0
replies
381
views
Forum:
Can Bioinformatics be used in developing a product?
product
company
business
updated 17 months ago by
Ram
44k • written 24 months ago by
user366312
▴ 20
0
votes
2
replies
1.2k
views
Forum:
Bioinformatics algorithm tutorials in C++/C
protein
gene
genome
updated 24 months ago by
Michael
54k • written 24 months ago by
sunnykevin97
▴ 980
34
votes
11
replies
9.4k
views
13 follow
Forum:
Gallery: Computational tools for DNA methylation
computational-tools
methylation
updated 21 months ago by
Ram
44k • written 8.5 years ago by
Shicheng Guo
★ 9.4k
6
votes
8
replies
3.1k
views
Forum:
PC build for Nanopore data analysis
python
PC
pipeline
nanopore-sequencing
24 months ago by
stan.aanhane
▴ 30
2
votes
3
replies
960
views
Forum:
What is difference between Bioinformatics and Data Science?
Data-Science
updated 17 months ago by
Ram
44k • written 2.0 years ago by
Ssonia
▴ 30
2
votes
2
replies
957
views
Forum:
Project ideas
project-ideas
updated 2.0 years ago by
Michael
54k • written 2.0 years ago by
nivedha
• 0
0
votes
0
replies
588
views
Forum:
Beagle5 imputation accuracy
beagle5
DR2
imputation
impute2
impute-info
2.0 years ago by
ch333
• 0
1
vote
6
replies
1.1k
views
Forum:
Bioinformatics Software Developer job interview steps and what to expect?
interview
software-development
updated 23 months ago by
Ram
44k • written 2.0 years ago by
d
• 0
2
votes
2
replies
799
views
Forum:
What sequencing method is the most efficient for identifying genes driving rare diseases?
NGS
GWAS
WGS
updated 17 months ago by
Ram
44k • written 2.1 years ago by
ehsanmofidichelan
• 0
5
votes
5
replies
1.1k
views
Forum:
Best book introducing R programming?
coding
R
2.1 years ago by
Scottie
▴ 10
4
votes
6
replies
1.6k
views
Forum:
How relevant are read numbers in FastQ headers for paired reads?
header
fastq
number
read
2.1 years ago by
Matthias Zepper
4.6k
0
votes
0
replies
632
views
Forum:
commonly-used bioinformatics pipeline
Galaxy
updated 17 months ago by
Ram
44k • written 2.1 years ago by
anasjamshed
▴ 120
0
votes
0
replies
573
views
Forum:
Master's topic in Bioinformatics
Bio-informatique
2.1 years ago by
Badji Oumar
• 0
13
votes
15
replies
3.4k
views
8 follow
Forum:
Biostar under spam attack - restrictions added to post content and title
meta
biostars
updated 15 months ago by
Ram
44k • written 8.9 years ago by
Istvan Albert
100k
0
votes
1
reply
817
views
Forum:
Retrieve SCCM data for client software distribution serviceNow
training
servicenow
online
2.1 years ago by
hkrtrainings408
• 0
47
votes
24
replies
6.6k
views
15 follow
Forum:
What's fascinating about Bioinformatics for potential students?
career
msc
updated 17 months ago by
Ram
44k • written 6.6 years ago by
Michael
54k
5
votes
8
replies
2.8k
views
Forum:
SQL-why do we need it in Bioinformatics ?
SQL
Programming
updated 17 months ago by
Ram
44k • written 2.1 years ago by
iibrams07
▴ 10
1,000 results • Page
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Recent Votes
Answer: geom_bar issue in ggplot2 with xlim()
A: How Can I Get The Human Chromosome Centromere Position And Chromosome Length In
GO analysis: Different results EnrichGO vs ShinyGO
Comment: NGS forensics: how to know if data is fabricated
T2T-CHM13 "complete" human genome gff/gtf annotation file
Answer: T2T-CHM13 "complete" human genome gff/gtf annotation file
Comment: Problem in getting geo file through GEOQUERY
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Recent Replies
Comment: BiomartException: Query ERROR for existing dataset in BioMart
by
Luqman
• 0
Yes please see below: TraesCS2B02G372900 TraesCS2B02G375100 TraesCS2B02G374700 TraesCS2B02G382000
Comment: Functional enrichment analysis for unique gene IDs
by
Pegasus
▴ 100
Thanks for your answer, but as far as I know, gProfiler2 does not support bacteria. Could you please suggest alternative websites or softwa…
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
J
▴ 10
Hi Alex, I'm sorry if I wasn't initially clear! The question hasn't changed; I had written in this post that I wanted all pairwise combinat…
Comment: BiomartException: Query ERROR for existing dataset in BioMart
by
Nyksubuz
▴ 20
Could share some examples for gene_ids?
Comment: Problem in getting geo file through GEOQUERY
by
anasjamshed
▴ 120
yeah but i am unable to find the link of GPL6244.soft.gz
Comment: Problem in getting geo file through GEOQUERY
by
ATpoint
82k
> Can you send me ftp link so I can download that soft file manually? Please find this link on your own by browsing the respective GEO ent…
Comment: Problem in getting geo file through GEOQUERY
by
anasjamshed
▴ 120
Thanks . I have downloaded all other files but just have problem in Error in downloadFile(myurl, destfile, mode = mode, quiet = TRUE)…
Answer: Problem in getting geo file through GEOQUERY
by
ATpoint
82k
Code runs for me and finishes in seconds. Maybe some poor internet connection on your end. Just set the timeout to 9999999 and retry. If th…
Comment: transanno liftvcf "Error: length of chromosome [chr] is not equal to length in c
by
ezz3
• 0
Thanks. I was wondering if that is the case but was having some issues understanding the transanno code which is written in rust and I don…
Answer: Multi-ploid data in ANGSD and NGSadmix
by
andersdetermig
▴ 20
1 ) I would not expect the haploid individuals to always cluster together but the model assumptions are violated. First of all the diploid…
Comment: transanno liftvcf "Error: length of chromosome [chr] is not equal to length in c
by
Pierre Lindenbaum
161k
"Are you using correct reference?" may be your reference is not using the same chrM. see https://www.biostars.org/p/199796/#199803
Comment: Fewer sites in vcf than in reference genome despite Emit_All_Sites argument
by
shpak.max
▴ 50
Could you please elaborate on what you mean by passing -L or -V, i.e. what would the appropriate argument be for -L with UnifiedGenotyper f…
Answer: Add stats to the plot
by
Ghada
• 0
It works. I have added this code my_comparisons=list(c("HRSV", "HRSV_RBV")) plot + stat_compare_means(method = "wilcox.test",…
Comment: Fewer sites in vcf than in reference genome despite Emit_All_Sites argument
by
LChart
3.9k
I believe UnifiedGenotyper is a locus walker that sets `emitEmptySites() = False`. As such you will not see entries for positions that have…
Comment: Problem in getting geo file through GEOQUERY
by
anasjamshed
▴ 120
Basically this is my code: if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") # # pkgs <- rowna…
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