30 minutes ago by
biocellbio
•
0
0
votes
0
replies
17
views
0
votes
6
replies
293
views
0
votes
0
replies
21
views
0
votes
6
replies
394
views
7 follow
updated 1 hour ago by
GenoMax
141k
•
written 3 days ago by
qudrat.nii
▴
10
0
votes
1
reply
77
views
0
votes
0
replies
38
views
795
votes
167
replies
142k
views
109 follow
updated 3 months ago by
Biostar
2.7k
•
written 7.4 years ago by
Istvan Albert
100k
0
votes
0
replies
45
views
0
votes
0
replies
45
views
19
votes
11
replies
14k
views
10 follow
2
votes
2
replies
180
views
3
votes
0
replies
90
views
updated 1 hour ago by
Ram
43k
•
written 11 hours ago by
Claire Watson
▴
60
0
votes
2
replies
159
views
updated 1 hour ago by
Ram
43k
•
written 23 hours ago by
The_PyPanda
▴
10
0
votes
0
replies
83
views
12 hours ago by
HarperReed
•
0
3
votes
3
replies
156
views
1
vote
0
replies
61
views
0
votes
0
replies
61
views
0
votes
0
replies
63
views
0
votes
1
reply
91
views
0
votes
0
replies
58
views
17 hours ago by
turcoa1
•
0
3
votes
3
replies
188
views
0
votes
0
replies
73
views
0
votes
0
replies
84
views
0
votes
1
reply
122
views
updated 1 day ago by
ATpoint
82k
•
written 1 day ago by
AaronJaime
•
0
0
votes
2
replies
177
views
0
votes
2
replies
208
views
updated 23 hours ago by
Ram
43k
•
written 1 day ago by
Assa Yeroslaviz
★
1.8k
1
vote
1
reply
143
views
1
vote
5
replies
249
views
updated 6 hours ago by
bk11
★
2.4k
•
written 1 day ago by
starswillfade
▴
10
0
votes
0
replies
85
views
0
votes
0
replies
81
views
updated 1 day ago by
Ram
43k
•
written 1 day ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
75
views
1
vote
0
replies
95
views
0
votes
0
replies
79
views
1 day ago by
synat.keam
▴
100
0
votes
0
replies
108
views
0
votes
1
reply
410
views
updated 1 day ago by
ginellegrenier
•
0
•
written 4 months ago by
Clayton
•
0
3
votes
4
replies
241
views
1 day ago by
QX
•
0
2
votes
1
reply
164
views
updated 1 day ago by
Adrian Altenhoff
★
1.1k
•
written 2 days ago by
hemantcnaik
•
0
0
votes
0
replies
92
views
2
votes
4
replies
241
views
updated 1 day ago by
Ram
43k
•
written 1 day ago by
ashaneev07
▴
20
2
votes
3
replies
207
views
updated 1 day ago by
Pierre Lindenbaum
161k
•
written 1 day ago by
analyst
▴
30
0
votes
1
reply
144
views
updated 1 day ago by
b.contreras.moreira
▴
170
•
written 1 day ago by
Broccoli
•
0
0
votes
3
replies
190
views
0
votes
1
reply
175
views
2
votes
4
replies
2.4k
views
updated 1 day ago by
ZhangYuanfeng
•
0
•
written 2.4 years ago by
Frazier Baker
•
0
1
vote
2
replies
226
views
2
votes
3
replies
248
views
updated 2 hours ago by
Ram
43k
•
written 1 day ago by
Ming Tommy Tang
★
3.9k
0
votes
4
replies
2.7k
views
updated 1 day ago by
evawillms183
•
0
•
written 8.3 years ago by
andrepleao
•
0
0
votes
0
replies
115
views
2
votes
3
replies
295
views
updated 4 days ago by
Mensur Dlakic
★
27k
•
written 4 days ago by
emmanouil.a
▴
120
0
votes
2
replies
223
views
Recent Votes
Recent Locations •
All
United States, just now
United States, just now
Seattle, WA USA, 1 minute ago
Cambridge, MA, 4 minutes ago
United States, 10 minutes ago
United States, 10 minutes ago
United States, 12 minutes ago
Recent Awards •
All
Popular Question to
chaco001
▴
40
Commentator to
GenoMax
141k
Popular Question to
rheab1230
▴
140
Popular Question to
BioinfGuru
★
1.7k
Popular Question to
vinayjrao
▴
250
Supporter to
Jalil Sharif
▴
80
Recent Replies
Answer: Create a new bed file with all pairwise combinations between two other bed files
by
Alex Reynolds
35k
I think Pierre's answer might be correct for your test input, but it doesn't account for the start position of the reference element and so…
Comment: Highest variable features in single cell data
by
bk11
★
2.4k
You need to be clear about how `Seurat` defines highly variable genes here. Highly variable genes are the genes that have very high express…
Comment: Heatmap and rna-seq
by
GenoMax
141k
Please include a link when you are recommending a tool. There can be programs with similar names.
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix
by
Ram
43k
Simple:
```r
data <- lapply(files, read_tsv)
data <- Reduce(merge, data) # or Reduce(full_join, data)
```
<a href="" title="Text added bec…
Answer: Source other conda environments in a nextflow pipeline when nextflow itself is i
by
ATpoint
82k
You can make each process use a dedicated environment, see https://www.nextflow.io/docs/latest/conda.html#use-existing-conda-environments
…
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix
by
BioinfGuru
★
1.7k
Hi,
Just thought I'd share this code snippet here for when each file contains multiple samples. I tried using lapply (as suggested by Ram)…
Comment: Low mapping rate with Salmon
by
i.sudbery
19k
Take your STAR alignment and sum all the counts for each gene. You can either do this by providing an annotation to STAR, or by running fea…
Comment: How to convert plink files to Hapmap Format
by
bk11
★
2.4k
If you run your data with plink 2.0, you will have ERRCODE column in your result file showing the reason behind "NA" p-value.
https://www.b…
Comment: genome assembly records not present in assembly_summary.txt
by
sapuizait
▴
10
jesus its in the Genbank file and I was looking at the refseq! I m such a moron - thanks for pointing it out -sorry about that :(
Comment: ScRNA data question
by
bk11
★
2.4k
I wonder how the `Vlnplots` will look if you normalize the data using `NormalizeData()` function in `Seurat`. The flat line in your plot ar…
Comment: Low mapping rate with Salmon
by
GenoMax
141k
> Does that mean that the reads that are not mapped to my trascriptome are not exons/coding genes?
Reads are likely aligning in regions wh…
Comment: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
by
cmdcolin
★
3.8k
the gencode link is broken now but here is a back up of that blogpost on archive https://web.archive.org/web/20130618221342/http://gencodeg…
Comment: Low mapping rate with Salmon
by
Patadu94
•
0
I'll try to make the decoy file again but I remember you also told me that it is only recommended and not mandatory for running `salmon`. I…
Comment: Low mapping rate with Salmon
by
Patadu94
•
0
For doing this, should I just look at the log.out.file?
Traffic: 2379 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6