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Jalil Sharif
Jalil Sharif
Reputation:
80
Joined:
6.2 years ago
Last seen:
12 months ago
Location:
United Kingdom
Latest posts by user
1 vote
0 replies
0 views
Answer: Answer: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
written by Jalil Sharif • Jalil Sharif
0 votes
3 replies
1.2K views
differential gene expression gene names/id vs transcript id
volcano-plot
updated by ATpoint ATpoint • written by Jalil Sharif • Jalil Sharif
0 votes
3 replies
1.3K views
DESeq2: "model matrix is not full rank"
deseq2
updated by Asaf Asaf • written by Jalil Sharif • Jalil Sharif
0 votes
0 replies
625 views
extracting gencode 3utr and 5utr as part of R pipeline
5utr 3utr
written by Jalil Sharif • Jalil Sharif
0 votes
0 replies
0 views
Comment: Comment: Intersecting transcriptome bam file with GTF file
written by Jalil Sharif • Jalil Sharif
0 votes
1 reply
0 views
Comment: Comment: Intersecting transcriptome bam file with GTF file
written by Jalil Sharif • Jalil Sharif
0 votes
2 replies
0 views
Comment: Comment: Intersecting transcriptome bam file with GTF file
written by Jalil Sharif • Jalil Sharif
0 votes
9 replies
3.2K views
Intersecting transcriptome bam file with GTF file
findoverlaps bedtools transcriptome
updated by rfran010 • rfran010 • written by Jalil Sharif • Jalil Sharif
0 votes
0 replies
0 views
Comment: Comment: samtools and Rsamtools in r
written by Jalil Sharif • Jalil Sharif
0 votes
1 reply
0 views
Comment: Comment: samtools and Rsamtools in r
written by Jalil Sharif • Jalil Sharif
0 votes
0 replies
0 views
Comment: Comment: samtools and Rsamtools in r
written by Jalil Sharif • Jalil Sharif
0 votes
6 replies
2.9K views
samtools and Rsamtools in r
samtools
updated by Ram Ram • written by Jalil Sharif • Jalil Sharif
2 votes
0 replies
0 views
Answer: Answer: extracting data from single end aligned bam file - chromosome, strand, start and
written by Jalil Sharif • Jalil Sharif
0 votes
0 replies
0 views
Comment: Comment: extracting data from single end aligned bam file - chromosome, strand, start and
written by Jalil Sharif • Jalil Sharif
0 votes
7 replies
2.4K views
extracting data from single end aligned bam file - chromosome, strand, start and stop from cigar
bam
updated by Istvan Albert Istvan Albert • written by Jalil Sharif • Jalil Sharif
0 votes
0 replies
0 views
Comment: Comment: Artificial reads - remove multiple mapped reads against reference genome, and on
written by Jalil Sharif • Jalil Sharif
0 votes
1 reply
0 views
Comment: Comment: Artificial reads - remove multiple mapped reads against reference genome, and on
written by Jalil Sharif • Jalil Sharif
0 votes
4 replies
2.1K views
Artificial reads - remove multiple mapped reads against reference genome, and only keep reads that completely match without any mismatches - samtools
samtools
written by Jalil Sharif • Jalil Sharif
0 votes
0 replies
0 views
Comment: Comment: gtf2bed not converting to bed
written by Jalil Sharif • Jalil Sharif
0 votes
12 replies
5.6K views
gtf2bed not converting to bed
bed gtf
updated by Juke34 Juke34 • written by Jalil Sharif • Jalil Sharif
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