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Jalil Sharif
Jalil Sharif
Reputation:
80 (New)
Joined:
6.5 years ago
Last seen:
1.2 years ago
Location:
United Kingdom
Latest posts by user
1 vote
0 replies
0 views
Answer: Answer: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
written by Jalil Sharif 8
0 votes
3 replies
1.3K views
differential gene expression gene names/id vs transcript id
volcano-plot
updated by ATpoint 9.1K • | written by Jalil Sharif 8
0 votes
3 replies
1.4K views
DESeq2: "model matrix is not full rank"
deseq2
updated by Asaf 1.0K • | written by Jalil Sharif 8
0 votes
0 replies
660 views
extracting gencode 3utr and 5utr as part of R pipeline
5utr 3utr
written by Jalil Sharif 8
0 votes
0 replies
0 views
Comment: Comment: Intersecting transcriptome bam file with GTF file
written by Jalil Sharif 8
0 votes
1 reply
0 views
Comment: Comment: Intersecting transcriptome bam file with GTF file
written by Jalil Sharif 8
0 votes
2 replies
0 views
Comment: Comment: Intersecting transcriptome bam file with GTF file
written by Jalil Sharif 8
0 votes
9 replies
3.3K views
Intersecting transcriptome bam file with GTF file
findoverlaps bedtools transcriptome
updated by rfran010 174 • | written by Jalil Sharif 8
0 votes
0 replies
0 views
Comment: Comment: samtools and Rsamtools in r
written by Jalil Sharif 8
0 votes
1 reply
0 views
Comment: Comment: samtools and Rsamtools in r
written by Jalil Sharif 8
0 votes
0 replies
0 views
Comment: Comment: samtools and Rsamtools in r
written by Jalil Sharif 8
0 votes
6 replies
3.0K views
samtools and Rsamtools in r
samtools
updated by Ram 4.5K • | written by Jalil Sharif 8
2 votes
0 replies
0 views
Answer: Answer: extracting data from single end aligned bam file - chromosome, strand, start and
written by Jalil Sharif 8
0 votes
0 replies
0 views
Comment: Comment: extracting data from single end aligned bam file - chromosome, strand, start and
written by Jalil Sharif 8
0 votes
7 replies
2.5K views
extracting data from single end aligned bam file - chromosome, strand, start and stop from cigar
bam
updated by Istvan Albert 10K • | written by Jalil Sharif 8
0 votes
0 replies
0 views
Comment: Comment: Artificial reads - remove multiple mapped reads against reference genome, and on
written by Jalil Sharif 8
0 votes
1 reply
0 views
Comment: Comment: Artificial reads - remove multiple mapped reads against reference genome, and on
written by Jalil Sharif 8
0 votes
4 replies
2.2K views
Artificial reads - remove multiple mapped reads against reference genome, and only keep reads that completely match without any mismatches - samtools
samtools
written by Jalil Sharif 8
0 votes
0 replies
0 views
Comment: Comment: gtf2bed not converting to bed
written by Jalil Sharif 8
0 votes
12 replies
5.7K views
gtf2bed not converting to bed
bed gtf
updated by Juke34 949 • | written by Jalil Sharif 8
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