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1.0k
Votes
183
Replies
31k
Views
What Are The Most Common Stupid Mistakes In Bioinformatics?
software
9.5 years ago
Jeremy Leipzig 18k • updated 3.0 years ago
mforde84 ♦ 1.2k
451
Votes
114
Replies
38k
Views
News: The Biostar Handbook. A bioinformatics e-book for beginners.
handbook tutorial training News
3.8 years ago
Istvan Albert 87k
324
Votes
56
Replies
37k
Views
Recommend Your Favorite Bioinformatics Books
books education
10.6 years ago
Istvan Albert 87k • updated 2.8 years ago
KVC_bioinfo • 390
314
Votes
78
Replies
109k
Views
Tool: Gnu Parallel - Parallelize Serial Command Line Programs Without Changing Them
tools parallel next-gen ngs Tool
18 months ago
ole.tange ♦ 3.4k
312
Votes
50
Replies
42k
Views
What Tools/Libraries Do You Use To Visualize Genomic Feature Data?
visualization genome
10.5 years ago
brentp 23k • updated 3.4 years ago
dariober 10k
307
Votes
65
Replies
16k
Views
Your Favorite Bioinformatics Blogs (March 2010)
subjective
10.6 years ago
Giovanni M Dall'Olio 26k • updated 2.2 years ago
CY • 340
282
Votes
112
Replies
13k
Views
Mean Length Of Fasta Sequences
code fasta sequence codegolf
10.2 years ago
Eric Normandeau 10k • updated 24 months ago
Jeremy Leipzig 18k
274
Votes
69
Replies
15k
Views
Forum: Is Bioinformatics On Decline? Only In The Web, Or Also Within Institutions?
subjective Forum
9.2 years ago
Senthil • 150 • updated 5.2 years ago
rathankar • 10
271
Votes
64
Replies
13k
Views
Bioinformatics "Cheat Sheet"
9.5 years ago
Chris Miller 20k • updated 3.9 years ago
jokipokemon0002 • 0
256
Votes
48
Replies
8.7k
Views
Forum: What Do You Waste Your Time On
bioinformatics scripting Forum
7.4 years ago
Asaf 5.6k • updated 3.9 years ago
i.sudbery 4.7k
243
Votes
24
Replies
26k
Views
Forum: Up-to-date RNA-Seq Analysis Training/Courses/Papers (Dec 2017)
RNA-Seq sequencing Forum papers Tutorial
2.8 years ago
CandiceChuDVM ♦ 1.9k
243
Votes
47
Replies
13k
Views
Forum: Bioinformatics courses, workshops or training
Training Workshop Tutorial Courses Forum
2.3 years ago
Deepak Tanwar ♦ 3.9k
240
Votes
72
Replies
139k
Views
Tools To Calculate Average Coverage For A Bam File?
coverage bam sequencing
9.7 years ago
Biomed 4.5k • updated 2.1 years ago
WouterDeCoster 39k
240
Votes
52
Replies
68k
Views
Which Are The Best Programming Languages For A Bioinformatician?
subjective programming
10.7 years ago
Giovanni M Dall'Olio 26k
236
Votes
35
Replies
23k
Views
How Do You Manage Your Files & Directories For Your Projects ?
file
2.6 years ago
Pierre Lindenbaum 120k
231
Votes
45
Replies
63k
Views
What Is The Best Pipeline For Human Whole Exome Sequencing?
next-gen sequencing illumina exome human
10.3 years ago
Biomed 4.5k • updated 5.6 years ago
Barry • 40
228
Votes
36
Replies
5.5k
Views
Forum: Good Habit for Bioinformatics Analyst or Scientist
Habit Analyst Scientist Forum
3.6 years ago
Shicheng Guo ♦ 7.5k
206
Votes
33
Replies
237k
Views
Gene Id Conversion Tool
mapping conversion
10.9 years ago
Renee • 570 • updated 17 months ago
fatimarasool135 • 20
203
Votes
33
Replies
85k
Views
Tutorial: How to download raw sequence data from GEO/SRA
GEO SRA fastq bam download Tutorial
6.1 years ago
Obi Griffith 17k • updated 21 months ago
Renesh ♦ 1.6k
201
Votes
41
Replies
20k
Views
Forum: Genomics is not Special. Computational Biologists are reinventing the wheel for big data biology analysis
genomics Forum cram gatk galaxy
5.9 years ago
William ♦ 4.4k • updated 5.8 years ago
Istvan Albert 87k
199
Votes
24
Replies
139k
Views
How To Filter Mapped Reads With Samtools
samtools
7.9 years ago
sohadb1357 • 500 • updated 15 months ago
ibseq12 • 0
196
Votes
30
Replies
46k
Views
Tutorial: Cheat Sheet For One-Based Vs Zero-Based Coordinate Systems
coordinates tutorial Tutorial
2.4 years ago
Obi Griffith 17k
195
Votes
27
Replies
20k
Views
Bioinformatic Cartoon
bioinformatics
8.7 years ago
Maxime Lamontagne ♦ 2.1k • updated 6.5 years ago
Biostar 20
194
Votes
53
Replies
33k
Views
Forum: Will Python Take The Place Of R?
r python biopython statistics Forum
7.4 years ago
Medhat 8.3k • updated 2.8 years ago
jared.andrews07 ♦ 2.4k
186
Votes
41
Replies
26k
Views
Where To Advertise Or Find Bioinformatics Jobs
job career
10.5 years ago
Istvan Albert 87k • updated 3.8 years ago
Mike ♦ 1.3k
179
Votes
51
Replies
13k
Views
I Am Preparing A Course On Ngs: Any Suggestion ?
next-gen sequencing galaxy
9.9 years ago
Pierre Lindenbaum 120k • updated 7.2 years ago
sarahhunter • 600
179
Votes
45
Replies
24k
Views
How To Organize A Pipeline Of Small Scripts Together?
general pipeline
10.6 years ago
Giovanni M Dall'Olio 26k • updated 2.2 years ago
Biostar 20
179
Votes
164
Replies
51k
Views
Tutorial: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
RNA-Seq TCGA Survival Tutorial
5.1 years ago
TriS ♦ 3.8k • updated 17 months ago
my6 • 0
174
Votes
43
Replies
62k
Views
Drawing Chromosome Ideograms With Data
chromosome visualization ideogram
10.5 years ago
Yuri ♦ 1.5k • updated 2.8 years ago
bernatgel ♦ 1.9k
171
Votes
26
Replies
4.2k
Views
How Do You Acknowledge Biostar And Its Contributors In Your Research Output?
biostar meta
9.6 years ago
Andra Waagmeester 3.2k • updated 8.4 years ago
Larry_Parnell 16k
170
Votes
45
Replies
54k
Views
Tutorial: Analysing Microarray Data In Bioconductor
tutorial bioconductor microarray analysis tutorial Tutorial
8.0 years ago
Obi Griffith 17k • updated 2.9 years ago
Kevin Blighe 43k
170
Votes
49
Replies
49k
Views
How To Remove The Same Sequences In The Fasta Files?
fasta sequence duplicates
9.9 years ago
Zhangleisdau • 270 • updated 22 months ago
michau • 20
168
Votes
34
Replies
17k
Views
Recommend Your Favorite Introductory "R In Bioinformatics" Books And Resources
r bioconductor books
10.5 years ago
Michael Dondrup 46k • updated 5.9 years ago
Parham ♦ 1.4k
163
Votes
25
Replies
80k
Views
Tool: Converting Genome Coordinates From One Genome Version To Another (Ucsc Liftover, Ncbi Remap, Ensembl Api)
genome coordinates conversion liftover ensembl Tool
2.4 years ago
Malachi Griffith 17k
161
Votes
30
Replies
71k
Views
What Is The Best Method To Find Orthologous Genes Of A Species?
orthologues
9.4 years ago
Ct586 • 540 • updated 6.0 years ago
Prakki Rama ♦ 2.3k
160
Votes
73
Replies
41k
Views
How To Efficiently Parse A Huge Fastq File?
next-gen sequencing fastq parsing
9.2 years ago
Panos ♦ 1.7k • updated 6.0 years ago
bstrs • 0
153
Votes
27
Replies
6.8k
Views
The Best Question To Ask In A Bioinformatics Seminar
subjective
9.8 years ago
Giovanni M Dall'Olio 26k • updated 9.7 years ago
k.nirmalraman • 980
152
Votes
32
Replies
5.2k
Views
Picking A Programming Language And Where To Begin
programming next-gen sequencing c subjective
9.1 years ago
Travis ♦ 2.8k • updated 8.6 years ago
Palani Kannan • 60
149
Votes
17
Replies
16k
Views
What Are The Big Questions That Bioinformatics And Computational Biology Will Be Answering In The Next Few Years?
5.4 years ago
Sean Davis 25k
147
Votes
21
Replies
12k
Views
Forum: Advice For Newcomers To The Bioinformatics Field
bioinformatics Forum
7.2 years ago
Medhat 8.3k • updated 2.2 years ago
hd1fernando • 0
145
Votes
56
Replies
5.4k
Views
Forum: Suggesting The Removal Of Post Closing
biostar Forum
7.5 years ago
Istvan Albert 87k • updated 7.3 years ago
Neilfws 48k
144
Votes
62
Replies
7.1k
Views
Forum: Is The Biostar Fading? (Updated For 2014)
biostar meta statistics Forum
9.6 years ago
Joachim ♦ 2.8k • updated 3.2 years ago
Michael Dondrup 46k
144
Votes
44
Replies
18k
Views
Which Bioinformatic Friendly Pipeline Building Framework?
scripting
23 months ago
Carlos Borroto ♦ 1.8k
143
Votes
33
Replies
21k
Views
C/C++ Libraries For Bioinformatics?
c c
10.3 years ago
Daniel Swan 13k • updated 17 months ago
chernouhov • 10
142
Votes
39
Replies
16k
Views
Forum: A Farewell To Bioinformatics
bioinformatics Forum
7.7 years ago
Martin A Hansen 3.0k • updated 3.0 years ago
Kevin Blighe 43k
140
Votes
39
Replies
139k
Views
How Do I Draw A Heatmap In R With Both A Color Key And Multiple Color Side Bars?
heatmap r
8.6 years ago
Obi Griffith 17k • updated 4.0 years ago
jokipokemon0001 • 0
139
Votes
38
Replies
8.3k
Views
Forum: Crac: Funny And/Or Weird Names For Bioinformatics Tools
bioinformatics Forum humor
7.5 years ago
Istvan Albert 87k • updated 5.0 years ago
jonathan.seguin • 0
136
Votes
29
Replies
5.1k
Views
How Do We Discourage Ad-Hoc Bioinformatic Analyses?
software
9.7 years ago
Jeremy Leipzig 18k • updated 5.6 years ago
abhishek.abhishekkumar • 20
136
Votes
30
Replies
44k
Views
Tutorial: Tools For Metagenomic Data Analysis
metagenomics next-gen tutorial Tutorial
7.8 years ago
vijay ♦ 1.5k • updated 2.1 years ago
MetaTK • 20
135
Votes
41
Replies
17k
Views
Forum: Are We Rude/Do We Expect Too Much From People Asking Questions On This Forum?
Forum
7.3 years ago
Whetting ♦ 1.5k • updated 7.0 years ago
always_learning • 970
134
Votes
21
Replies
18k
Views
Tutorial: A few words for R beginners
Swirl R beginner Tutorial
5.8 years ago
Parham ♦ 1.4k • updated 4.0 years ago
hed.robin • 30
134
Votes
14
Replies
14k
Views
What Are The Classic Papers In Bioinformatics?
literature papers
9.9 years ago
Casey Bergman 18k • updated 9.9 years ago
Israel Barrantes • 740
131
Votes
24
Replies
50k
Views
Recommended Tools For Alternative Splicing Detection From Rna-Seq Data
splicing tools rna-seq alternative-splicing
7.6 years ago
Nicolas Rosewick 7.7k • updated 2.5 years ago
kristoffer.vittingseerup ♦ 1.8k
130
Votes
26
Replies
19k
Views
Best Way For A Beginner To Get Up To Speed On Unix Quickly?
unix genomics perl tutorial
8.7 years ago
Brett Thomas • 250 • updated 7.4 years ago
Josh Herr 5.6k
130
Votes
37
Replies
9.8k
Views
What Are The Obsolete Research Topics In Bioinformatics?
9.1 years ago
Sirus • 770 • updated 9.1 years ago
Pals ♦ 1.3k
128
Votes
83
Replies
5.5k
Views
Tool: Lossless ALAPY Fastq Compressor (now for MacOS X with 10-20% improved speed and compression ratio)
fastq compressor lossless fastq compression Tool
3.2 years ago
Petr Ponomarenko ♦ 2.6k
127
Votes
47
Replies
9.6k
Views
Justifying Learning Linux For Bioinformatics
linux subjective
9.1 years ago
Eric Normandeau 10k • updated 9.1 years ago
Guangchuang Yu ♦ 2.2k
127
Votes
32
Replies
39k
Views
Tutorial: Working with MAF files (Mutation Annotation Format) from the TCGA (The Cancer Genome Atlas)
mutation maf tcga cancer music Tutorial
7.4 years ago
Cyriac Kandoth 5.3k • updated 2.6 years ago
Shicheng Guo ♦ 7.5k
125
Votes
53
Replies
43k
Views
Selecting Random Pairs From Fastq?
random fastq sequence illumina code
9.5 years ago
Ketil 3.9k • updated 4.5 years ago
plijnzaad • 30
125
Votes
13
Replies
126k
Views
What Is The Sequencing 'Depth' ?
next-gen sequencing
10.5 years ago
Pierre Lindenbaum 120k • updated 4.0 years ago
jokipokemon0001 • 0
125
Votes
46
Replies
77k
Views
Fastq Convert To Fasta
perl
6.9 years ago
biolab ♦ 1.1k • updated 18 months ago
microbez.uaf • 0
124
Votes
27
Replies
29k
Views
Why Are There Many Rna-Seq Hits To Intronic Regions?
rna-seq
8.4 years ago
lh3 31k • updated 4.5 years ago
Michael Dondrup 46k
122
Votes
29
Replies
4.5k
Views
What License Do You Use When You Release Code And Data?
general software subjective
10.5 years ago
Simon Cockell 7.3k • updated 6.8 years ago
Biostar 20
122
Votes
39
Replies
43k
Views
Multiline Fasta To Single Line Fasta
sequence fasta
9.3 years ago
Palu • 170 • updated 2.7 years ago
teckpor • 10
122
Votes
17
Replies
26k
Views
Why Does Rna-Seq Read Count Fit Poisson Distribution?
rna-seq modeling
6.9 years ago
sckinta • 510 • updated 16 months ago
lffu_0032 • 30
122
Votes
42
Replies
6.7k
Views
News: Help Make Biostar Better! Add Your Feedback, Opinions And Suggestions.
biostar meta News
7.8 years ago
Istvan Albert 87k • updated 3.8 years ago
jonasmst • 280
118
Votes
31
Replies
95k
Views
Is There A Free Alternative To Ingenuity Pathway Analysis?
network pathway
9.6 years ago
Gon • 470 • updated 17 months ago
malina • 0
118
Votes
19
Replies
51k
Views
Database Of Tumor Suppressors And/Or Oncogenes
cancer gene database oncogene tumor
8.7 years ago
Malachi Griffith 17k • updated 21 months ago
21angelicguitars • 0
117
Votes
59
Replies
19k
Views
Help a graduate student going into Bioinformatics looking for a new personal laptop. Should I get a Mac or a PC?
computer newbie next-gen bioinformatics hardware
5.4 years ago
Angelo Victoria • 30 • updated 22 months ago
seansopherfield • 0
116
Votes
44
Replies
12k
Views
What Is Your Favorite Question To Ask When Interviewing Potential Bioinformaticians?
job subjective
10.3 years ago
Madelaine Gogol 5.1k • updated 4.2 years ago
5heikki 8.4k
115
Votes
15
Replies
89k
Views
Economics Of A Career In Bioinformatics
career
9.9 years ago
Terence • 190 • updated 9.7 years ago
Mona Mohamed • 0
115
Votes
21
Replies
100k
Views
When To Choose Python Over Perl (And Vice Versa)?
python perl comparison
8.9 years ago
Niek De Klein ♦ 2.5k • updated 8.5 years ago
Aditya Joshi • 30
115
Votes
35
Replies
4.9k
Views
Forum: Is Biostar Killing The Bioinformatics Core?
biostar Forum core
7.5 years ago
Jeremy Leipzig 18k • updated 17 months ago
JC 7.9k
115
Votes
73
Replies
33k
Views
Is there a Lims that doesn't suck?
LIMS
9.8 years ago
Casbon ♦ 3.2k • updated 2.6 years ago
Kevin Blighe 43k
113
Votes
18
Replies
115k
Views
Forward And Reverse Strand Conventions
sequence strand
9.9 years ago
Andrea_Bio ♦ 2.5k • updated 9.7 years ago
Neilfws 48k
113
Votes
53
Replies
1.7k
Views
Forum: Middle author, but not first author projects. How would you approach this?
career development authorship Forum
17 months ago
pet.bioinformatician • 170 • updated 17 months ago
Dawe • 270
112
Votes
44
Replies
14k
Views
Forum: Trimming adapter sequences - is it necessary?
RNA-Seq NGS adapter Forum
4.0 years ago
Lars • 650 • updated 4.0 years ago
David Langenberger 8.9k
110
Votes
37
Replies
5.2k
Views
Bioinformatics Career Survey 2011/2012
career job
9.0 years ago
Pierre Lindenbaum 120k • updated 8.6 years ago
Jeroen Van Goey 2.2k
110
Votes
23
Replies
22k
Views
Why are we still using Bam files? And not Cram, HDF5 or improved Bam files?
bam cram io hdf
6.2 years ago
WilliamS • 300 • updated 6.0 years ago
Pavel Senin ♦ 1.9k
110
Votes
25
Replies
50k
Views
Tutorial: Piping With Samtools, Bwa And Bedtools
samtools bedtools bwa unix Tutorial
8.4 years ago
Ying W ♦ 3.9k • updated 4.9 years ago
Yaseen Ladak • 20
108
Votes
31
Replies
28k
Views
Forum: Where To Look For Quality Bioinformatics Short Courses And Workshops?
bioinformatics Forum
7.1 years ago
Eric Normandeau 10k • updated 19 months ago
sudharshanva • 0
107
Votes
27
Replies
22k
Views
Why You Need Perl/Python If You Know R/Shell [Ngs Data Analysis]
python next-gen
8.4 years ago
Sukhdeep Singh 9.8k • updated 6.6 years ago
Biostar 20
107
Votes
28
Replies
84k
Views
Correct Way To Parse A Fasta File In Python
fasta parsing python
10.4 years ago
Eric Normandeau 10k • updated 2.0 years ago
RamRS 21k
107
Votes
24
Replies
75k
Views
Useful Bash Commands To Handle Fasta Files
command-line command-line fasta list bash
8.6 years ago
Anima Mundi ♦ 2.4k • updated 2.9 years ago
Joe 12k
105
Votes
46
Replies
8.5k
Views
Forum: Why Does Biostar Cover Questions On Epigenetics, But Not Intelligent Design?
Forum
7.1 years ago
ugly.betty77 ♦ 1.0k • updated 4.5 years ago
mickeymousegames2016 • 0
105
Votes
7
Replies
21k
Views
What Makes One Probability Distribution Better For Rna-Seq Than Another?
rna
9.6 years ago
Jeremy Leipzig 18k • updated 9.6 years ago
Stan Letovsky • 140
105
Votes
25
Replies
11k
Views
Is There Such A Thing As A Ucsc Api?
ucsc python comparative api
9.9 years ago
Steve Moss 2.2k • updated 4.3 years ago
jayanthisreejith7 • 10
105
Votes
24
Replies
39k
Views
Workflow Or Tutorial For Snp Calling?
snp samtools alignment next-gen sequencing
9.4 years ago
Matthieu • 430 • updated 4.5 years ago
alexisdereeper • 30
105
Votes
72
Replies
8.5k
Views
Digesting Fasta Sequences Into A Set Of Smaller Sequences
code fasta sequence codegolf
10.2 years ago
Eric Normandeau 10k • updated 24 months ago
zx8754 7.5k
104
Votes
21
Replies
14k
Views
Why Should I Use Galaxy ?
galaxy workflow
3.4 years ago
Pierre Lindenbaum 120k
104
Votes
25
Replies
99k
Views
Where Can I Download Human Reference Genome In Fasta Format? Hgref.Fa File
human fasta sequence bwa
10.2 years ago
Biomed 4.5k • updated 3.6 years ago
Hajk-Georg Drost • 130
103
Votes
43
Replies
23k
Views
Forum: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
ChIP-Seq visualization deeptools ngsplot homer Forum
4.6 years ago
Sinji ♦ 2.8k • updated 2.7 years ago
chiefcat • 100
103
Votes
20
Replies
16k
Views
What Wetlab Techniques Does A Bioinformatician Need To Be Able To Perform, If Any?
education meta
9.5 years ago
Andra Waagmeester 3.2k • updated 9.5 years ago
Pablo Pareja ♦ 1.6k
103
Votes
18
Replies
32k
Views
What Are The Best Bioinformatics Course Materials And Videos (Available Online)?
education online
9.2 years ago
Nikolay Vyahhi ♦ 1.2k • updated 3.4 years ago
adavut • 20
102
Votes
28
Replies
54k
Views
Tools To Find Gene Ontology Term Enrichment
gene enrichment tool
10.5 years ago
Biostar User ♦ 1.0k • updated 3.9 years ago
jin • 80
102
Votes
25
Replies
22k
Views
Transcript to gene level count for DEseq(2) use- Salmon/Sailfish/Kallisto etc.
Salmon DESeq DESeq2 RNASeq Kallisto
5.3 years ago
mhockin • 540 • updated 5.3 years ago
Michael Love ♦ 1.8k
100
Votes
19
Replies
12k
Views
How Does A Bioinformatics Scientist Document His/Her Work?
workflow bioinformatics
8.3 years ago
Anjan • 810 • updated 8.3 years ago
Zhilong Jia ♦ 1.4k
100
Votes
20
Replies
36k
Views
Sequence Length Distribution From A Fastq File
sequence length fastq
7.3 years ago
deepthithomaskannan • 260 • updated 16 months ago
LuckyLuck • 0
99
Votes
21
Replies
6.1k
Views
Forum: How Has Bioinformatics Improved Over Time?
Forum
7.7 years ago
Kate • 370 • updated 6.4 years ago
mikhail.shugay 3.3k
99
Votes
9
Replies
108k
Views
How Can I Convert Bam To Sam?
next-gen sequencing bam sam conversion
10.2 years ago
Biomed 4.5k • updated 6.9 years ago
Chris Miller 20k
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Comment: Testing image upload
Testing spam
Random SNPs simulation?
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Answer: Biostar Forum Posting Guidelines by jessica • 0
I'm glad and so happy I found this forum release, I couldn't find any knowledge on this topic prior to. I think this is an helpful post and…
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Answer: How do play audio (playsound) in background of Python script? by smileykhan1212 • 0
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@Natay-Aberra Natay, see how the first two lines are omitted for display: ``` <?xml version="1.0" encoding="UTF-8" ?> <!DOCTYPE Docume…
Answer: this is a test post by RamRS 21k
Testing XML within a code block that did not work in Biostars classic (see https://www.biostars.org/p/448891/#448897, where I had to use a …
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