0
votes
0
replies
16
views
0
votes
0
replies
24
views
2 hours ago by
hagl
▴
10
0
votes
4
replies
341
views
updated 2 hours ago by
pinheirofabiano
▴
10
•
written 3 days ago by
qudrat.nii
▴
10
0
votes
5
replies
239
views
19
votes
11
replies
14k
views
10 follow
795
votes
167
replies
141k
views
109 follow
updated 3 months ago by
Biostar
2.7k
•
written 7.4 years ago by
Istvan Albert
100k
2
votes
2
replies
158
views
3
votes
0
replies
72
views
0
votes
2
replies
146
views
7 hours ago by
The_PyPanda
▴
10
0
votes
0
replies
70
views
8 hours ago by
HarperReed
•
0
3
votes
3
replies
116
views
1
vote
0
replies
51
views
0
votes
0
replies
50
views
10 hours ago by
SineWave
•
0
0
votes
0
replies
51
views
0
votes
1
reply
79
views
0
votes
0
replies
47
views
13 hours ago by
turcoa1
•
0
3
votes
3
replies
178
views
0
votes
0
replies
64
views
0
votes
0
replies
76
views
0
votes
1
reply
112
views
updated 21 hours ago by
ATpoint
82k
•
written 21 hours ago by
AaronJaime
•
0
0
votes
2
replies
170
views
0
votes
2
replies
197
views
updated 19 hours ago by
Ram
43k
•
written 1 day ago by
Assa Yeroslaviz
★
1.8k
1
vote
1
reply
136
views
1
vote
5
replies
213
views
updated 2 hours ago by
bk11
★
2.4k
•
written 1 day ago by
starswillfade
▴
10
0
votes
0
replies
79
views
0
votes
0
replies
74
views
updated 20 hours ago by
Ram
43k
•
written 1 day ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
68
views
1
vote
0
replies
87
views
0
votes
0
replies
72
views
1 day ago by
synat.keam
▴
100
0
votes
0
replies
99
views
0
votes
1
reply
403
views
updated 1 day ago by
ginellegrenier
•
0
•
written 4 months ago by
Clayton
•
0
3
votes
4
replies
232
views
21 hours ago by
QX
•
0
2
votes
1
reply
158
views
updated 1 day ago by
Adrian Altenhoff
★
1.1k
•
written 1 day ago by
hemantcnaik
•
0
0
votes
0
replies
86
views
2
votes
4
replies
235
views
updated 20 hours ago by
Ram
43k
•
written 1 day ago by
ashaneev07
▴
20
2
votes
3
replies
201
views
updated 1 day ago by
Pierre Lindenbaum
161k
•
written 1 day ago by
analyst
▴
30
0
votes
1
reply
138
views
updated 1 day ago by
b.contreras.moreira
▴
170
•
written 1 day ago by
Broccoli
•
0
0
votes
2
replies
167
views
0
votes
1
reply
167
views
2
votes
4
replies
2.4k
views
updated 1 day ago by
ZhangYuanfeng
•
0
•
written 2.4 years ago by
Frazier Baker
•
0
0
votes
2
replies
204
views
2
votes
1
reply
169
views
updated 20 hours ago by
Ram
43k
•
written 1 day ago by
Ming Tommy Tang
★
3.9k
0
votes
4
replies
2.7k
views
updated 1 day ago by
evawillms183
•
0
•
written 8.3 years ago by
andrepleao
•
0
0
votes
0
replies
110
views
2
votes
3
replies
288
views
updated 3 days ago by
Mensur Dlakic
★
27k
•
written 4 days ago by
emmanouil.a
▴
120
0
votes
2
replies
217
views
0
votes
2
replies
200
views
updated 1 day ago by
Mensur Dlakic
★
27k
•
written 1 day ago by
biochugs
•
0
8
votes
8
replies
529
views
1
vote
8
replies
769
views
updated 1 day ago by
Pierre Lindenbaum
161k
•
written 7 days ago by
Maria
•
0
1
vote
10
replies
913
views
1 day ago by
DKA
▴
40
Recent Votes
Recent Locations •
All
United Kingdom, 1 minute ago
United States, 5 minutes ago
United States, 7 minutes ago
Washington D.C., 8 minutes ago
Kansas City, 9 minutes ago
United States, 9 minutes ago
United States, 10 minutes ago
Recent Awards •
All
Popular Question to
rheab1230
▴
140
Popular Question to
BioinfGuru
★
1.7k
Popular Question to
vinayjrao
▴
250
Supporter to
Jalil Sharif
▴
80
Popular Question to
sil_bioinfo
▴
40
Popular Question to
sapuizait
▴
10
Recent Replies
Comment: Low mapping rate with Salmon
by
i.sudbery
19k
Take your STAR alignment and sum all the counts for each gene. You can either do this by providing an annotation to STAR, or by running fea…
Comment: How to convert plink files to Hapmap Format
by
bk11
★
2.4k
If you run your data with plink 2.0, you will have ERRCODE column in your result file showing the reason behind "NA" p-value.
https://www.b…
Comment: genome assembly records not present in assembly_summary.txt
by
sapuizait
▴
10
jesus its in the Genbank file and I was looking at the refseq! I m such a moron - thanks for pointing it out -sorry about that :(
Comment: ScRNA data question
by
bk11
★
2.4k
I wonder how the `Vlnplots` will look if you normalize the data using `NormalizeData()` function in `Seurat`. The flat line in your plot ar…
Comment: Low mapping rate with Salmon
by
GenoMax
141k
> Does that mean that the reads that are not mapped to my trascriptome are not exons/coding genes?
Reads are likely aligning in regions wh…
Comment: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
by
cmdcolin
★
3.8k
the gencode link is broken now but here is a back up of that blogpost on archive https://web.archive.org/web/20130618221342/http://gencodeg…
Comment: Low mapping rate with Salmon
by
Patadu94
•
0
I'll try to make the decoy file again but I remember you also told me that it is only recommended and not mandatory for running `salmon`. I…
Comment: Low mapping rate with Salmon
by
Patadu94
•
0
For doing this, should I just look at the log.out.file?
Answer: Heatmap and rna-seq
by
pinheirofabiano
▴
10
install.packages("pheatmap")
library(pheatmap)
setwd("/Users/data_analysis/results")
data <- read.table(file…
Comment: Low mapping rate with Salmon
by
Patadu94
•
0
Thanks for the link GenoMax. But I was wondering, should not alignment and mapping have a similar rate and thus be correlated? In my case I…
Answer: Create a new bed file with all pairwise combinations between two other bed files
by
Pierre Lindenbaum
161k
bedtools intersect \
-a <(sort -t $'\t' -k1,1 -k2,2n A.bed) \
-b <(awk '{X=250000;P=int($2);printf("%s\t%d\…
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
J
•
0
The command lines I wrote out for you are the ones I actually used. My original reference to bedtools intersect was because I assumed the b…
Comment: ScRNA data question
by
starswillfade
▴
10
I just thought it was weird that considering each dot is a cell their expressions were all on a single line instead of being spread out lik…
Comment: ScRNA data question
by
starswillfade
▴
10
![enter image description here][1] I am already using Seurat V5 I think. I am using SCTransform as it was recommended by the seurat page. I…
Answer: genome assembly records not present in assembly_summary.txt
by
GenoMax
141k
Can you clarify what `metainfo` you are referring to?
The accession that you refer to does exist in [**GenBank assembly_summary file**][1…
Traffic: 2911 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6