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0 votes
3 replies
1.4K views
How to count the number and proportion of different barcode combinations in DNA sequencing results
dna-sequencing barcode
updated by Ram 4.5K • | written by tulip 0
0 votes
4 replies
1.7K views
Challenges with Parallelizing BUSCO for Phylogenetic Tree Construction on Large Genome Dataset
busco hpc slurm
updated by Ram 4.5K • | written by Mir-Mammad 0
0 votes
1 reply
841 views
Clinvar Filter
human genome vcf clinvar
updated by GenoMax 16K • | written by shabbas12 1
0 votes
0 replies
556 views
DiffBind ProfilePlot Having High Wide High Signals
diffbind atac-seq
written by B.N. 1
0 votes
0 replies
811 views
MAF file visualization on UCSC genome browser Custom Track
maf track cactus ucsc custom
written by Santex 0
0 votes
4 replies
2.7K views
samtools BGZF block error
samtools
written by Novice 1
0 votes
0 replies
686 views
How to get the information for plotting methylation percentage along genomic regions?
methylkit dmrs genomation bismark
written by Sofia 0
0 votes
2 replies
1.1K views
Filtering the vcf file
vcf
written by trezini 0
0 votes
4 replies
1.2K views
How do N's in DNA sequences affect multi-sequence alignments for PCR assay testing?
multi-sequence pcr alignment
written by Ryan 0
0 votes
0 replies
679 views
News: Course - RNA Sequencing Data with R/Bioconductor
r bioconductor rna-seq differential-expression-analysis
updated by Ram 4.5K • | written by Physalia-courses 281
0 votes
0 replies
745 views
stringdb - where is a description of the database download tables?
stringdb
updated by GenoMax 16K • | written by mcsimenc 3
0 votes
0 replies
697 views
MS(CSIT) VS MS(DS)
computer-science career data-science
updated by Ram 4.5K • | written by anasjamshed 14
0 votes
1 reply
787 views
Find SfiI cleavage sites in the human genome
motif meme sfii fimo
updated by GenoMax 16K • | written by Mitmischer 0
1 vote
0 replies
567 views
Inflammatory genes identification
cancer inflammatory-genes rna-seq
updated by Ram 4.5K • | written by Jaber 3
0 votes
0 replies
761 views
Job: Postdoctoral Research Fellowship Program at the American Museum of Natural History
postdoctoral research
written by Info-rggs 2
0 votes
2 replies
2.7K views
Dealing with 2 different layers of counts within RNA assay in seurat
r seurat
updated by bk11 312 • | written by Varun Gupta 129
0 votes
3 replies
1.6K views
Understanding IGV
vcf igv bam wgs
updated by GenoMax 16K • | written by zizigolu 438
0 votes
4 replies
2.1K views
Help with subset seurat object by a column in metadata
seurat
written by Chris 36
1 vote
19 replies
5.3K views
DESEQ with time series data on mutant vs. wild-type?
deseq
updated by mazegriff 10 • | written by Megan 6
0 votes
10 replies
10K views
GATK "We encountered a non-standard non-IUPAC base in the provided reference: '13"
gatk
updated by skdv2522 0 • | written by Phismil 2
0 votes
2 replies
1.1K views
Bos Taurus, Bos Indicus and Bubalus bubalis GTF,GFF,GFF3 file
buffalo
updated by Ram 4.5K • | written by Muhammad 0
0 votes
7 replies
2.0K views
How can I extract 3'UTR of bacteria (Pseudomonas aeruginosa) without using R?
prokaryotes utr
updated by Michael Dondrup 5.6K • | written by Anshika 0
0 votes
2 replies
1.0K views
vdjtools
vdjtools
updated by GenoMax 16K • | written by yueli7 25
0 votes
0 replies
832 views
Understanding Tumor Contamination vs. Cellularity
cancer purity cnv
written by George 3
2 votes
1 reply
878 views
Selection Pressure Analysis
paml positive-selection evolutionary-analysis
updated by Ram 4.5K • | written by upasana 2
0 votes
2 replies
1.2K views
Using scRNA-seq to draw concrete evidence about transitional cluster
scrna-seq
written by odi 3
0 votes
3 replies
1.1K views
MAKER has many FAILED
genome softmask maker annotation
updated by GenoMax 16K • | written by san96 19
0 votes
1 reply
777 views
Where can I locate cancer genome?
cancer genome whole exome
updated by GenoMax 16K • | written by Chloe 0
0 votes
0 replies
769 views
DiffBind Profile Plot Error
diffbind atac-seq
updated by GenoMax 16K • | written by B.N. 1
3 votes
0 replies
622 views
Tool: I Built a Simple Website to Help Students Find Research Labs
students career research academia web-application
written by bitsofadventures 4
0 votes
0 replies
563 views
Bacterial annotators: chromosomes, plasmids, integrons, prophages ?(and other mobile element)
integrons chromosomes plasmids
updated by GenoMax 16K • | written by psuazosoto 0
6 votes
8 replies
6.5K views
Tool: New ultraperformant version of SICER/epic: epic2
chip-seq
updated by GenoMax 16K • | written by endrebak852 11
0 votes
2 replies
1.4K views
bcftools/vt split multiallelics - split GT along with splitting multi-allelics
multiallelics decompose bcftools vcf vt
written by Ram 4.5K
0 votes
4 replies
1.3K views
VCF filter by read depth
vcf
updated by Ram 4.5K • | written by shu8 0
0 votes
0 replies
778 views
Volcano Plot and DGE analysis
dge volcano-plot scrna-seq
updated by Ram 4.5K • | written by JuanJo 0
1 vote
1 reply
700 views
only ~12% of assigned reads on featurecount
rna-seq
updated by DGTool 30 • | written by diogo.moraes 2
1 vote
1 reply
1.1K views
Where can I find a database of healthy genotypes as well as a database of genetic diseases to link these data?
snpid database genotypes
updated by Jeremy Leipzig 2.3K • | written by Crypto 1
1 vote
3 replies
4.2K views
Weird behaviour - WGCNA hub analysis results in Cytoscape through CytoHubba plugin change every time I run it!
rnaseq wgcna cytoscape hubs cytohubba
updated by xanderpico 58 • | written by Raito92 10
1 vote
5 replies
3.1K views
UMItools dedup deduplication taking too much time + RAM
umi-tools bam rna-seq
updated by i.sudbery 2.3K • | written by lluc.cabus 4
0 votes
0 replies
524 views
iMAT (integrative metabolic análisis tool) - MATLAB
imat matlab
updated by Ram 4.5K • | written by debocolman 0
0 votes
1 reply
967 views
Does vg provides an api?
cpp vg api
updated by Jordan M Eizenga 78 • | written by guntul 4
0 votes
2 replies
738 views
Aligning a genome with a size of about 300,000.
alignment snapgen genome
updated by GenoMax 16K • | written by trezini 0
0 votes
1 reply
828 views
Similar tools to visualize pileup of long-read alignments to a STR locus
str long-reads pileups nanopore
updated by WouterDeCoster 4.8K • | written by Antonio 0
2 votes
1 reply
715 views
What is trait discoverability?
snp phenotype gene trait
updated by GenoMax 16K • | written by _quantum_girl_ 8
0 votes
0 replies
833 views
Salmon transcript-level to gene-level quantification
r salmon rna-seq
written by Mitmischer 0
1 vote
1 reply
1.1K views
SNP Density plot with custom genome using karyoploteR
ngs snp r
updated by zx8754 1.2K • | written by adarsh 8
0 votes
2 replies
1.4K views
Need help with AUGUSTUS and AGAT for gene prediction and feature extraction, respectively.
augustus agat annotation genome agat
updated by Juke34 949 • | written by Vijith 10
0 votes
3 replies
1.1K views
Detection of unknown sub cells in a population of cells using DEGs from scRNAseq data
scrnaseq
updated by ATpoint 9.1K • | written by ashkan 16
0 votes
5 replies
2.3K views
Decision on Upregulated/Downregulated Genes in DE list- P-value and Log fold change
pvalue logfoldchange
updated by Mensur Dlakic 3.0K • | written by odi 3
0 votes
24 replies
5.1K views
TCGA Biolinks code issue
normalization tcgabiolinks
updated by mazegriff 10 • | written by nuorain 4
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