This is a test version of Biostars. For the public version, visit https://www.biostars.org.
0 votes
3 replies
2.1K views
Error in pheatmap 'Error in hclust(d, method = method) : must have n >= 2 objects to cluster' for selected genes
pheatmap
updated by Mensur Dlakic 3.0K • | written by aackermann287 0
0 votes
5 replies
1.2K views
MarkDuplicatesSpark throwing disk quota errors
gatk
written by ChumBucket2024 1
0 votes
0 replies
621 views
Linear Mixed-effects Modelling for Mouse Tumor Growth Data
lmertest modelling mixed-effects lme4
written by BioNovice247 3
1 vote
4 replies
2.2K views
Cannot process a custom VCF file using bcftools
r bcftools vcf
updated by Pierre Lindenbaum 17K • | written by Qiong 1
0 votes
1 reply
657 views
filter genes for differential gene expression
rna-seq differential-gene-expression
updated by Ram 4.5K • | written by bleven 0
1 vote
0 replies
1.0K views
Best Practices for Tumor-Only WES Data Analysis: Seeking Feedback on Variant Calling Pipeline
gatk mutect wes cancer
written by George 3
0 votes
0 replies
630 views
CODEX/Phenocycler -> QuPath -> Seurat pipeline basic help needed
qupath codex seurat phenocycler
written by yura.grabovska 94
0 votes
1 reply
1.0K views
How to compare SNPs in different population
snps genome vcf
updated by dthorbur 350 • | written by Elisa 0
0 votes
0 replies
614 views
News: RADseq data analysis using Stacks (online course)
radseq phylogenomics population-genomics stacks
updated by Ram 4.5K • | written by Physalia-courses 281
0 votes
2 replies
1.3K views
KEGG MAPPER Reconstruct
kegg mapper
updated by andres.firrincieli 412 • | written by Julián 0
1 vote
6 replies
1.7K views
RNA-Seq multiple lane
bam rna-seq transcriptomics
written by MaxMin 1
0 votes
4 replies
1.4K views
Problems with Megahit wanting to overwrite the Input for the output directory
metagenomics megahit slurm
updated by Pierre Lindenbaum 17K • | written by Jan 0
0 votes
6 replies
2.1K views
Pheatmap cluster by columns not working
r pheatmap
written by Nona 9
0 votes
5 replies
2.4K views
error when installing gistic2 using conda
conda gistic2
updated by bioruffo 6 • | written by luckyday1661 1
0 votes
2 replies
1.0K views
LOC gene on opposite DNA-strand causes lower log2FC value?
genes loc bulk-rna-seq
updated by colindaven 844 • | written by Biomed-jeh 8
1 vote
0 replies
500 views
How to determine the origin of replication of plasmid
plasmid
written by Bruntland Aldre 2
0 votes
4 replies
1.9K views
genome assembly records not present in assembly_summary.txt
ncbi bacteria assembly
updated by ajmalpdrc 0 • | written by sapuizait 1
0 votes
3 replies
1.0K views
The best tool for Scaffolding
contigs scaffold assembly spades
updated by dthorbur 350 • | written by davidmaimoun 6
0 votes
2 replies
1.2K views
Assembly Question
question flye contig assembly
updated by ajmalpdrc 0 • | written by parb2182 1
0 votes
5 replies
1.7K views
Best Way to Assemble DNA Sequencing Data
dna-sequencing assembly
updated by ajmalpdrc 0 • | written by echolley 2
0 votes
3 replies
1.2K views
SPAdes for specific strain assembly from stool sequenced data
assembly spades fastq
updated by dthorbur 350 • | written by chemokine-1 1
0 votes
3 replies
1.8K views
Cross-strand correlation for paired-end ChIP-seq data
paired-end chip-seq relcc single-end
updated by LChart 518 • | written by alison.ludzki 0
0 votes
3 replies
1.1K views
Error with filterbytile.sh from BBMap suite
quality control reads
written by SHIRUI 1
0 votes
2 replies
1.3K views
RMSD value greater than backbone
docking rmsd md molecular simulation
updated by aUser 8 • | written by Tiara 0
2 votes
0 replies
1.3K views
Tool: Neurosnap Tools: New Fully Open Source Package For Molecular Biology
msa protein docking ligand pdb
written by keaun 4
0 votes
2 replies
911 views
Matrix for a Fisher's exact test
p-value fishers-test
updated by stu.tug 0 • | written by Adelya 0
0 votes
3 replies
1.1K views
Help With Sleuth
sleuth rnaseq
updated by dsull 781 • | written by Rangarajan 2
0 votes
3 replies
1.2K views
ballgown shows very different results depending on number of groups prepared with hisat2-stringtie
ballgown stringtie
written by thomas.heigl.ibk 2
0 votes
1 reply
1.0K views
DiffBind count function error related with BiocParallel and IRanges
dba chipseq iranges diffbind
written by buffealo 13
0 votes
1 reply
693 views
Gene expression relational database
relational-database gene-expression
updated by Ram 4.5K • | written by Daniela Alejandra 0
0 votes
3 replies
1.5K views
Error during batch correction/PCA
rna-seq batch-effect
written by Eduardo Oñate 0
0 votes
7 replies
1.8K views
Mendelian precison
cnv trios mendelian-precision
updated by Ram 4.5K • | written by heureuse 1
0 votes
6 replies
2.6K views
Using BBtools to remove polyGs in Illumina data
bbtools
updated by Brian Bushnell 2.0K • | written by hpapoli 17
0 votes
2 replies
1.1K views
Clarification on UMI Length in FASTQ File after Trimming with fastp
umi adapter
updated by GenoMax 16K • | written by daffodil 1
0 votes
8 replies
2.0K views
HTseq count issue, not aligning to features
htseq hisat2 rna-seq
written by boone5jones 2
0 votes
11 replies
3.0K views
Sankey + dot plot
r sankey gene-ontology go
updated by dthorbur 350 • | written by Sofia 0
0 votes
3 replies
1.7K views
How to convert CSV format to VCF using Python?
vcf csv python
updated by Ram 4.5K • | written by Mohadese 0
1 vote
4 replies
1.7K views
When to use integration with scRNASeq
r seurat scrna-seq
updated by Bastien Hervé 680 • | written by Varun Gupta 129
0 votes
0 replies
464 views
Annotating WGS Metagenome assemblies
metagenomics assembly metagenome annotation
written by naveedhasan2000 1
0 votes
13 replies
3.4K views
featureCounts segmentation fault
featurecounts pipeline rna-seq
written by Jaber 3
0 votes
2 replies
1.3K views
how to get visium HD dataset with its information
spatial visiumhd transcriptomics scanpy
updated by Nat.Nataren 10 • | written by Genomancer 0
1 vote
10 replies
3.9K views
Using GEOquery
r geo ncbi
updated by Ram 4.5K • | written by Aryan 4
0 votes
4 replies
2.3K views
Performing Needleman-Wunsch Global Alignment for multiple mutant proteins against wild-type
global-alignment needleman-wunsch
updated by Istvan Albert 10K • | written by VolEr 4
0 votes
2 replies
1.1K views
Merging bfiles
fam plink bfile bed
written by aj123 14
1 vote
1 reply
842 views
Generally how are non-canonical chromosomes treated in human variation studies
variants sv assembly wgs
updated by GenoMax 16K • | written by eebloom 11
0 votes
8 replies
2.7K views
Problem obtaining RNA-seq counts for whole gene (intron and exon), exon only, and intron only
rna-seq featurecounts
written by Ian 614
0 votes
0 replies
652 views
Differences in DeepTools Heatmap Resolution Driven by Bed File
deeptools heatmaps atacseq
written by gcooper1245 1
7 votes
9 replies
3.8K views
Forum: The Evolution of NGS: What’s New and What’s Next?
ngs
updated by GenoMax 16K • | written by lakhujanivijay 594
0 votes
0 replies
762 views
How to do multiz alignment locally
axtchain lastz multiz
updated by GenoMax 16K • | written by Santex 0
0 votes
0 replies
466 views
Significant difference in SNV count between replicates
vcf mutations wes snv
written by dana 0
Recent Votes
Recent Locations
Recent Replies