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0 votes
4 replies
1.4K views
Looking for proteins play role in cardiovascular diseases (disease ontology)
proteomics protein uniprot disease-ontology
written by Bendegúz • Bendegúz
0 votes
2 replies
1.8K views
Job: Variant Analyst Opening in Qatar
clinical-interpretation cnv snv
updated by Medhat Medhat • written by rajeefa • rajeefa
0 votes
1 reply
632 views
Convert vcf to specified input
snp vcf
updated by Pierre Lindenbaum Pierre Lindenbaum • written by thomm80 • thomm80
0 votes
4 replies
1.7K views
Genotype imputation without a reference panel
genotyping-array-data reference-panel genotype-imputation
updated by Pine • Pine • written by Mohadese • Mohadese
0 votes
0 replies
556 views
Significant colocalisation across two GWAS SumStats with opposite "effect sizes"
coloc effect-size gwas colocalisation
written by Pine • Pine
0 votes
4 replies
1.4K views
MoCha For CNV calling
mocha cnv
updated by Ram Ram • written by heureuse • heureuse
1 vote
3 replies
3.3K views
Structural Variants (SV) Manta output interpretation
manta vcf
updated by DGTool • DGTool • written by aLex97 • aLex97
1 vote
2 replies
1.2K views
Understanding how champ.DMP determines the reference group for phenotypes
phenotype champ champ.dmp r
written by Benjamin • Benjamin
0 votes
1 reply
1.1K views
Samtools: exclude secondary and supplementary alignments
samtools
updated by Ram Ram • written by Alexandra • Alexandra
0 votes
0 replies
581 views
News: Variant Analysis Online Course @ Edinburgh Genomics
variant-analysis online-training
updated by Ram Ram • written by Edinburgh Genomics Training • Edinburgh Genomics Training
0 votes
3 replies
1.2K views
Variant callers for single cell WGS
variant single-cell wgs
written by Binny • Binny
0 votes
6 replies
1.5K views
Problem while using Tophat 2.1.0 to search gene fusions
blast tophat
written by Pallondyle • Pallondyle
0 votes
2 replies
1.1K views
Significant p values with non significant looking figures
pvalue fish microbiomes pcoa
updated by Philipp Bayer Philipp Bayer • written by mattescott44 • mattescott44
0 votes
8 replies
1.9K views
calling super enhancers
ose
written by Oburah • Oburah
1 vote
1 reply
930 views
Best approach for identifying top proteins in a single cluster in single-cell analysis
adt citeseq single-cell seurat
updated by bk11 • bk11 • written by singAsong • singAsong
0 votes
2 replies
1.2K views
Comparing exposure time points of RNA-seq data of samples exposed to various treatments
transcriptomics time-series
updated by Arby • Arby • written by abba647 • abba647
0 votes
0 replies
595 views
generate consensus sequence for PSMC analysis
bcftools consensus-sequence
updated by Ram Ram • written by asatullayevtemurrr • asatullayevtemurrr
0 votes
2 replies
880 views
Tools for assembling Plasmid Genome
illumina plasmid e.coli assembly
written by adarsh • adarsh
1 vote
4 replies
1.6K views
Poor dispersion fit in DESeq2
deseq2 rna-seq edger limma
updated by Ram Ram • written by Ben • Ben
0 votes
5 replies
1.4K views
RNASeq Analysis: data from different library
rna-seq ngs
updated by i.sudbery i.sudbery • written by Matteo • Matteo
0 votes
4 replies
1.2K views
R-studio, install, R, Installation error
rstudio offtopic
updated by Michael Dondrup Michael Dondrup • written by naveennavinbeast • naveennavinbeast
1 vote
1 reply
967 views
ATAC-Seq Differential Peak Analysis
atac-seq
updated by Ram Ram • written by B.N. • B.N.
0 votes
0 replies
492 views
How to calculate inbreeding coefficient out of ROH (Plink)
plink
written by t-ishige • t-ishige
0 votes
4 replies
4.1K views
Transcriptome Improvement Using Cell Ranger Count vs. ARC for RNA-Seq Data from Frozen Nuclei in Multimodal Analysis
multiomics scatac cellranger scrna 10x
updated by jared.andrews07 jared.andrews07 • written by NaomiK • NaomiK
1 vote
1 reply
610 views
ROAST
rna-seq
updated by GenoMax GenoMax • written by Pegasus • Pegasus
0 votes
0 replies
519 views
Quorum sensing genes in Bacteria
rna-seq
written by Pegasus • Pegasus
0 votes
0 replies
733 views
Uncertainty on Which Data to Use for Alpha Diversity Analysis (Shannon)
iteration shannon rarefaction boxplot alpha
written by Joe Kherery Joe Kherery
0 votes
0 replies
414 views
Can I use a dataset that has batch effect as a reference in scmap?
scrna-seq annotation
written by D • D
0 votes
2 replies
1.1K views
Track file for the DADA2 pipelne
microbiome-analysis metagenomics dada2 16s-amplicon
written by naveedhasan2000 • naveedhasan2000
0 votes
2 replies
975 views
Help with data finding.
p_value ncbidataset replot
written by A29J • A29J
0 votes
0 replies
886 views
News: online course - Metabolomics with R/Bioconductor
metabolomics bioconductor multivariate-data untargeted targeted
updated by Ram Ram • written by Physalia-courses Physalia-courses
2 votes
9 replies
5.9K views
Creating a Seurat object with Visium public available data
spatial visium 10x
updated by Nat.Nataren • Nat.Nataren • written by charms.charms • charms.charms
0 votes
9 replies
2.5K views
How to approach DESeq2 analysis on 2 plant lines infected with virus, with 2 time points (days post infection)
multifactor deseq2
written by duplessisantzel • duplessisantzel
0 votes
1 reply
895 views
Noise confounding genes in single cell data
single-cell
updated by Ram Ram • written by carolofharvest • carolofharvest
0 votes
1 reply
1.0K views
Zea Maize ID conversion
id-conversion zea-mays
updated by Ram Ram • written by SKY • SKY
0 votes
0 replies
806 views
How to build a spliced pangenome graph and a pantranscriptome
vg
written by Wenhai • Wenhai
0 votes
0 replies
613 views
Merging Imputed VCF with Reference Panel VCF
vcf glimpse imputation
written by selplat21 • selplat21
0 votes
5 replies
2.6K views
Salmon quantification not as expected; "versionInfo.json doesn't seem to exist"
salmon
updated by dsull dsull • written by Haad • Haad
0 votes
1 reply
1.1K views
Harmony integration of integarted samples
scrna-seq harmony
updated by jared.andrews07 jared.andrews07 • written by fifty_fifty • fifty_fifty
0 votes
2 replies
1.2K views
index sequence in fastq header
fastq
written by hpapoli hpapoli
0 votes
3 replies
1.2K views
Build RG information for BWA
bwa
updated by GenoMax GenoMax • written by hpapoli hpapoli
0 votes
21 replies
8.0K views
Help Choosing a Workstation for a New Bioinformatics Service
ngs hardware workstation
updated by i.sudbery i.sudbery • written by AresSanchz • AresSanchz
0 votes
0 replies
682 views
spike-in-methods in 16s microbial analysis
16s spike-in microbiome
written by mrashad mrashad
0 votes
0 replies
555 views
Is this phasing result normal?
haplotyping sequencing phasing nanopore
written by njornet • njornet
0 votes
0 replies
416 views
Selection Pressure Analysis
selection-pressure ka-ks
updated by Ram Ram • written by zhu • zhu
0 votes
2 replies
1.3K views
X chromosome in bedtoolsIntersect
bedtools
updated by Pierre Lindenbaum Pierre Lindenbaum • written by wiscoyogi • wiscoyogi
0 votes
1 reply
1.2K views
est-sfs error
est-sfs non-model-organism ancestral-allele
updated by shanghonyu • shanghonyu • written by Whirlingdaf • Whirlingdaf
0 votes
8 replies
2.1K views
cellranger count error:
cellranger
written by CRISPYCC • CRISPYCC
0 votes
1 reply
957 views
Integration of paired and single-end SRA
paired-end single-end vcf resequencing
updated by Brian Bushnell Brian Bushnell • written by reza reza
1 vote
1 reply
1.3K views
High inconsistency between edgeR and DESeq2
log-ratio edger glm deseq2
updated by bk11 • bk11 • written by lyan125 • lyan125
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