Clinvar Filter

I have downloaded the complete .vcf file for human genome (GRCh38) from [Clinvar][1]. I want to filter all the variants only from promoter regions. Could anyone please let me know how I can achieve this same results using R or any other available tools?

human genome vcf clinvar

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updated 1.8 years ago by GenoMax

• written 1.8 years ago by shabbas12 •

Get a BED file of the promoter regions and then use bedtools intersect (https://bedtools.readthedocs.io/en/latest/content/tools/intersect.html ).

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written 1.8 years ago by GenoMax

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