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645 views
dRep Output
metagenomics mags drep
written by pranjalarun10 0
0 votes
0 replies
972 views
News: Course: Intro to Network Analysis, Sept, 2025.
python network analysis
written by soledad.esteban 1
0 votes
9 replies
2.3K views
Annotation comparison files on NCBI of gene assembly
annotation
updated by GenoMax 16K • | written by zirui 0
0 votes
1 reply
1.8K views
Kraken2/bracken with 16S sequencing downstream analysis
microbiome qiime2 dada2 metagenomics kraken2
updated by andres.firrincieli 412 • | written by Isidro 0
0 votes
0 replies
1.1K views
News: Online Course – LLM-based tools for R (28 & 31 October 2025)
llms ai r
written by Physalia-courses 281
0 votes
1 reply
841 views
inferCNV on Visium 10X: lower residual expression in tumoral spots (heatmap interpretation)
infercnv cnv visium score
updated by GenoMax 16K • | written by Gabriele 0
0 votes
2 replies
1.2K views
Two config files for one Snakemake file
config yaml snakemake
written by Xiaokang 8
0 votes
4 replies
1.1K views
Exome data analysis computing resources requirement query
exome
updated by GenoMax 16K • | written by 1769mkc 127
1 vote
5 replies
12K views
TCGA MSI status
tcga clinical msi
updated by GenoMax 16K • | written by jan 19
0 votes
6 replies
1.3K views
Summing the counts of duplicated genes in RNA seq data?
genes duplicated
written by toobavaraste 0
2 votes
0 replies
612 views
Assembling a derivative chromosome from ONT WGS data
ont assembly whole-genome
written by Noah 3
0 votes
5 replies
1.4K views
[VG sim, surject, giraffe] How to remove a sample from GFA/GBZ graph
vg
written by saruman 1
0 votes
1 reply
613 views
naccess installation error
naccess
updated by GenoMax 16K • | written by Angelo 0
1 vote
3 replies
1.8K views
Download Isoform expression data from tcga
cancer transcript gene isoform
updated by t.fosk 0 • | written by nourmahfel 1
0 votes
11 replies
5.5K views
Visualization of RNA-seq gene expression only one gene of interest between 2 conditions
rna-seq
updated by rajdeepboral00 7 • | written by Chris 36
0 votes
1 reply
600 views
feature_ref files in upstream analyses related to Perturb-seq
perturb-seq
updated by GenoMax 16K • | written by 2443422660 0
0 votes
7 replies
2.2K views
Forum: Theoretical Question: Is Sub-Angstrom Geometric Identity (RMSD < 0.1 Å) in Convergent Evolution Possible?
kinesin biophysics biology molecular myosin
updated by GenoMax 16K • | written by Alberto 1
0 votes
0 replies
1.0K views
News: online course: An Introduction to Nanopore Direct RNA Sequencing (RNA004) - 27–30 October
directrnaseq nanopore rna004 rnamodifications
written by Physalia-courses 281
0 votes
2 replies
1.0K views
Refflat file for Rattus norvegicus
refflat rattus-norvegicus rna-seq
updated by Ram 4.5K • | written by AIMAR 7
0 votes
6 replies
2.3K views
Forum: LogFC on geometric means vs on arithmetic means. Presto vs Seurat
presto seurat logfc general questions
updated by ATpoint 9.1K • | written by e.r.zakiev 26
0 votes
1 reply
973 views
Question about anova-like test using Limma
makecontrasts limma
updated by Gordon Smyth 916 • | written by Daniel 1
1 vote
3 replies
1.1K views
asking for optimized bash scripting
analysis
updated by Joe 2.2K • | written by QX 9
0 votes
5 replies
1.3K views
Differential expression genes
seq dge rna
updated by GenoMax 16K • | written by m90 3
1 vote
3 replies
1.3K views
Discrepancy Between Fragment Size Distribution and MACS3-Predicted Fragment Length in ChIP-seq Dataset
macs3
written by christoph.neu 2
0 votes
4 replies
1.5K views
Plotting of genes using tpm matrix
normalization tpm boxplot
updated by i.sudbery 2.3K • | written by rajdeepboral00 7
1 vote
2 replies
882 views
A question about model matrix and contrast
makecontrasts limma
written by jkim 25
0 votes
1 reply
1.5K views
Understanding MAG completeness and contig composition in metagenomic bins
data shotgun
updated by andres.firrincieli 412 • | written by shevch2009 2
0 votes
4 replies
1.2K views
Understanding NCBI vs ENA data
ena ncbi sra
updated by GenoMax 16K • | written by wes 9
0 votes
2 replies
1.4K views
Job: Assistance running population specific hapibd
ancestry haplotype ibd
updated by cmdcolin 448 • | written by CJ169 0
0 votes
1 reply
788 views
Empty result using enrichGO
clusterprofiler
updated by GenoMax 16K • | written by Chris 36
1 vote
1 reply
6.7K views
Convert ct file to dot bracket format
rna structure
updated by zahraniasari.2023 0 • | written by abdullahrenk 3
0 votes
2 replies
2.5K views
News: Hands-On Workshop - Next-Generation Sequencing Data Analysis: A Practical Introduction (September 10-12, 2025 in Berlin, Germany)
workshop rna-seq illumina variantcalling dna-seq
written by ecSeq Bioinformatics 9
0 votes
0 replies
890 views
Is it possible to perform XP-EHH and iHS on targeted sequencing data without a .map file?
ngs ihs analysis selection sequencing
written by slzr_ 1
0 votes
0 replies
440 views
Job: Scientist Bioinformatics at BASF | Nunhems (near Eindhoven , The Netherlands)
basf plants
written by WS_jobs 0
0 votes
2 replies
1.1K views
Discrepancy in RNA editing calls between STAR and Subjunc aligners using JACUSA2
jacusa2 rnaseq subjunc star rsubread
written by thomas.heigl.ibk 2
1 vote
1 reply
841 views
RNA-Seq paired-end datasets
paired-end rna-seq bioinformatic
updated by Matthias Zepper 524 • | written by AIMAR 7
0 votes
0 replies
1.1K views
News: Course: Introduction to CRISPR
genomeediting crispr evolution
written by Physalia-courses 281
0 votes
3 replies
1.5K views
Best strategy for comparing cell-type composition between disease and healthy groups in single-cell RNA-seq data
single_cell
updated by ATpoint 9.1K • | written by 城玮 0
0 votes
4 replies
1.6K views
RNA-seq assigned alignments
paired-end star rna-seq mapping single-end
updated by jaro.slamecka 28 • | written by Manko47 1
0 votes
1 reply
886 views
Obtain Common SNPS for Mouse Genome
mouse snps
updated by GenoMax 16K • | written by joe_genome 7
0 votes
3 replies
2.4K views
How do you clean GEO metadata before downstream analysis?
geo
updated by yura.grabovska 94 • | written by Alba 0
1 vote
1 reply
2.3K views
Seeking high-quality curated metabolic models with time-resolved flux data for sonification project
metabolism sonification networks
updated by Mensur Dlakic 3.0K • | written by omereilam1 0
0 votes
0 replies
592 views
Standard way to represent represent indel (insertion or deletion) alleles within a haplotype
haplotypes indels haploview
written by Mwangana 0
0 votes
1 reply
3.6K views
lovis4u Configuration
graph lovis4u genomics
updated by GenoMax 16K • | written by NIkita 0
0 votes
1 reply
2.2K views
Tool: Tool to clean GEO metadata
geo metadata
updated by yura.grabovska 94 • | written by Alba 0
1 vote
2 replies
4.0K views
WGBS Analysis with 1 control sample and 6 disease samples
one wgbs sample
updated by ATpoint 9.1K • | written by Cassandra 1
0 votes
2 replies
4.1K views
How to extract gene list from GEO dataset in R
coding beginner question r
updated by Shohel 0 • | written by decorus 0
0 votes
6 replies
4.5K views
RNA seq strandedness (reverse-strand)
seq reverse-stranded strand rna
written by ZuelTech 0
0 votes
0 replies
478 views
TFs and enrichment analysis for TRAP sequencing
trap
written by Genesis 0
0 votes
2 replies
3.7K views
Extract track data from "search by region" feature on ENCODE
encode
written by AlienPumpkinPie 0
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