Obtain Common SNPS for Mouse Genome
Hello,
I'm having difficulties obtaining common SNPs for the mouse genome. In human (hg38), this is quite more clear; however, for mouse, I can get the SNPS/indels from https://www.mousegenomes.org/snps-indels/. However, how would I be able to determine/extract common SNPs from these?
Can someone please help me with this?
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GenoMax
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joe_genome •
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joe_genome •
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These are multi-strain VCF's so you could look for SNP's common across the strains (see --> Shared variants ) . Keep in mind that mice used for research are inbred and thus allele frequencies key for human populations don't apply.