naccess installation error

Hello I am trying to install naccess on a unbuntu installation (old version) due to the need of reusing my old scripts based on it. However, the installation generates error message like this:


$ compiling accall.f
accall.f:174:19:

       write(4,'(a,i,a,i,a)') DIMENSIONED FOR ',

Error: Nonnegative width required in format string at (1)

and others three similar errors.

Any suggestion? Thanks

naccess

• 607 views • link

updated 1.1 years ago by GenoMax

• written 1.1 years ago by Angelo •

Are you referring to https://www.bioinf.manchester.ac.uk/naccess/nac_intro.html ? This appears to be a very old FORTRAN program that says it uses FORTRAN 77. It may also be 32-bit.

Which FORTRAN compiler are you using (gfortran?).

Looks like there are current options like FreeSASA (LINK) that you may want to consider instead.

• 0 views • link

written 1.1 years ago by GenoMax

0 answers

No answers yet.

More posts like this

Issues with BRAKER2 (v.2.1.6)--not producing "genemark_hintsfile.gff.prot.tmp"
written 5.1 years ago by vizzerraa •

Hi, BRAKER2 (v.2.1.6) is not producing the "genemark_hintsfile.gff.prot.tmp" file after ProtHint finishes, what could be causing this issue? The full command was /data/selaginella/anaconda3/envs/braker2_conda_env/BRAKER-2.1.6/scripts/braker.pl --genome=/data/selaginella/DATA/annotations/braker_wallacei_test/a.lines.fa --bam=/data/selaginella/DATA/annotations/braker_wallacei_test/wallacei.sorted.bam …
Problem installing DESeq2 in R4.0 linux16.04
written 6.2 years ago by matiasbmg •

I did if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("DESeq") I received this Bioconductor version 3.11 (BiocManager 1.30.10), R 4.0.0 (2020-04-24) Installing package(s) 'DESeq' also installing …
Issues installing new VEP: Bio::DB:HTS library not found
written 6.5 years ago by nikitavlassenko

I cloned the VEP repo: [https://github.com/ensembl/ensembl-vep][1] Then I installed **Archive::Zip** and **DBI**: cpanm -v Archive::Zip cpanm -v DBI And tried running **perl INSTALL.pl** But it …
package gwascat is not available for R version 3.4.4
written 8.2 years ago by daviqd.halvorsen •

Hello! I am trying to install the 'gwascat' package, from Bioconductor, for RStudio without success. I'd like to repeat the [23andMe data analysis protocol I …
Tutorial: gencore: a tool to reduce sequencing noises by generating consensus reads
written 8.3 years ago by chen

`gencore` is a tool to generate consensus reads. It's a new open source project in github: https://github.com/OpenGene/gencore . It is one project developed by [OpenGene][1] …
Install BatVI on Ubuntu
written 8.4 years ago by marongiu.luigi

Dear all, I am trying to install a software called [BatVI][1], required for the identification of virus integrants. The README file states that the installation …
Forum: BWA command guide
written 8.4 years ago by Chen Sun

**SYNOPSIS** <BLOCKQUOTE> bwa index ref.fa bwa mem ref.fa reads.fq > aln-se.sam bwa mem ref.fa read1.fq read2.fq > aln-pe.sam bwa aln ref.fa short_read.fq > aln_sa.sai bwa …
Issues with variant effect predictor installation
written 9.8 years ago by cookersjs •

I am trying to install Ensembl's variant effect predictor and have run into an installation issue right off the bat. I downloaded the VEP zip …
Tutorial: Minimum Standards For Bioinformatics Command Line Tools
written 13.0 years ago by Medhat

Hi, I found this article, I think It is a nice one for developing a command line tools. Source [Minimum standards for bioinformatics command line …
Tutorial: Fastq Quality Control And Reporting - Aka Fastqc Versus The New Contenders
written 13.5 years ago by Istvan Albert

The venerable [FastQC][1] is many scientists' first choice to generate that first look of a sequencing data. The software created in 2010 runs as a …