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nikitavlassenko
nikitavlassenko
Reputation:
120
Joined:
8.9 years ago
Last seen:
5.1 years ago
Location:
United States
Latest posts by user
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Comment: C: DBD::SQLite::db prepare failed: no such table: phylocsf_summary
written by nikitavlassenko nikitavlassenko
0 votes
1 reply
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Comment: C: bcftools view gives empty file when trying to subset it
written by nikitavlassenko nikitavlassenko
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3 replies
2.0K views
bcftools view gives empty file when trying to subset it
bcftools
written by nikitavlassenko nikitavlassenko
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1 reply
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Comment: C: DBD::SQLite::db prepare failed: no such table: phylocsf_summary
written by nikitavlassenko nikitavlassenko
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4 replies
3.9K views
DBD::SQLite::db prepare failed: no such table: phylocsf_summary
vep loftee phylocsf
updated by Biostar Biostar • written by nikitavlassenko nikitavlassenko
1 vote
1 reply
2.2K views
Issues installing PhyloCSF for VEP: opam install ocamlbuild
phylocsf vep ensembl
updated by Daniel • Daniel • written by nikitavlassenko nikitavlassenko
0 votes
0 replies
1.3K views
Debugging VEP issue: no debug output present
vep debugging
written by nikitavlassenko nikitavlassenko
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0 replies
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Comment: C: Running VEP without --cache
written by nikitavlassenko nikitavlassenko
0 votes
3 replies
7.7K views
Running VEP without --cache
vep
updated by ATpoint ATpoint • written by nikitavlassenko nikitavlassenko
3 votes
0 replies
0 views
Answer: A: Issues installing new VEP: Bio::DB:HTS library not found
written by nikitavlassenko nikitavlassenko
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0 replies
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Comment: C: Issues installing new VEP: Bio::DB:HTS library not found
written by nikitavlassenko nikitavlassenko
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1 reply
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Comment: C: Issues installing new VEP: Bio::DB:HTS library not found
written by nikitavlassenko nikitavlassenko
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6 replies
13K views
Issues installing new VEP: Bio::DB:HTS library not found
vep
written by nikitavlassenko nikitavlassenko
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0 replies
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Comment: C: Extract columns from VCF file using bcftools preserving all the header info
written by nikitavlassenko nikitavlassenko
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Comment: C: Convert VCF4.1 to VCF4.2 using bcftools (preferrably)
written by nikitavlassenko nikitavlassenko
0 votes
3 replies
4.6K views
Convert VCF4.1 to VCF4.2 using bcftools (preferrably)
bcftools vcf
updated by Ram Ram • written by nikitavlassenko nikitavlassenko
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Comment: C: Where to get GERP_scores.final.sorted.txt.gz for VEP analysis
written by nikitavlassenko nikitavlassenko
0 votes
2 replies
2.1K views
Where to get GERP_scores.final.sorted.txt.gz for VEP analysis
vep hail gerp
updated by GenoMax GenoMax • written by nikitavlassenko nikitavlassenko
2 votes
2 replies
7.4K views
Extract columns from VCF file using bcftools preserving all the header info
bcftools vcf
updated by finswimmer finswimmer • written by nikitavlassenko nikitavlassenko
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Answer: A: Automatic parsing of VCF and correcting value types
written by nikitavlassenko nikitavlassenko
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