This is a test version of Biostars. For the public version, visit https://www.biostars.org.
dRep Output

Hello Community, I have some doubts regrading dRep output for metagenomic data. I had done drep on all my MAGs with option -pa 0.9 -sa 0.95 and af 0.30 how do i identify the SGBs, are all the dreplicated genomes in folders are SGBs? in widb.csv file I have columns genomes, scores, cluster and cluster members. In cluster column we have 1_1, 1_2, 1_3.... 2_0, 3_1 , 3_2 and their member number in cluster members column. so are all these SGBs? If so then why 1_1 , 1_2, 1_3 are all same genomes according to the gtdb-tk output ? Please help me understand this.

metagenomics mags drep

0 answers

No answers yet.

Log in to answer this question.