Is it possible to perform XP-EHH and iHS on targeted sequencing data without a .map file?
I’m working with targeted sequencing data and I’m interested in performing XP-EHH and iHS analyses. However, I don’t have a .map file available. I’m unsure whether these analyses are applicable to targeted sequencing datasets, and whether it’s possible to run them without a .map file. Is there a way to generate a suitable map file for this type of data, or are these analyses not recommended in this context? Any guidance would be greatly appreciated.
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