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0 replies
1.1K views
News: Online Course: Phylogenomics – 1–5 December
phylogenomics divergencetimeestimation phylogeneticinference
written by Physalia-courses 281
1 vote
5 replies
1.7K views
How do I generate synthetic 16S RNA gene sequences?
16s sequence rrna infernal augmentation data oversampling cmemit
updated by shelkmike 201 • | written by Max Sikolenko 8
0 votes
1 reply
1.1K views
Minimap2 Output
with singletons interleaved minimap2
updated by Istvan Albert 10K • | written by Jon 3
0 votes
1 reply
787 views
Liftover from mm10 to CAST/PWK – Very Low Mapping Rate & Missing Chain File
liftover
updated by GenoMax 16K • | written by daffodil 1
1 vote
10 replies
2.4K views
Does edgeR supports random effects?
rnaseq voom randomeffects edger limma
written by 406339165 1
0 votes
3 replies
1.0K views
Intro + Question
internship contribution
updated by Pierre Lindenbaum 17K • | written by akshitabadrinath 0
1 vote
3 replies
1.2K views
New to Bioinformatics, Phage genome investigation
prostt5 genetics phages bacteriophage sphae
updated by Michael Dondrup 5.6K • | written by Hanhan2000 1
0 votes
2 replies
883 views
Issues for Purchasing The Biostar Handbook – Professional Edition
biostar handbook
written by JB007 0
0 votes
4 replies
1.6K views
STAR aligned BAM files
genome_aligned star bam files transcripts
updated by Ram 4.5K • | written by rajdeepboral00 7
0 votes
0 replies
948 views
Statistical comparison of chr8 amplifications in matched primary vs metastatic WGS samples using log2 CN data
statistics copy-number cnvkit
updated by Ram 4.5K • | written by Dalal 0
0 votes
1 reply
745 views
undefined chro name in vcf header
unplacedcontigs header vcf randomcontigs
written by Mahdi&Christ 2
1 vote
2 replies
1.2K views
Fixing MGI Sequence Headers - FASTQ Format
fastq mgi
written by joe_genome 7
0 votes
1 reply
574 views
how extract CpG methylatiuon calls from nanopore long sequencing bam file ?
methylation
updated by Ram 4.5K • | written by reziyamaimaiti0331 0
0 votes
4 replies
2.5K views
Draw a genome map with CGView server?
assembly genome map cgview
updated by Max Sikolenko 8 • | written by El Niño 1
0 votes
1 reply
1.0K views
The branch point is not labelled as expected
monocle
updated by wschen97 0 • | written by Lin 0
1 vote
11 replies
16K views
Significance of the term "tile" in sequencing?
genomics
updated by Christopher 1 • | written by joe_genome 7
1 vote
2 replies
782 views
chromosome ideogram
chromosome
updated by cmdcolin 448 • | written by zhangmyharper 1
0 votes
2 replies
1.1K views
bin reassembly question
data metawrap assembly shotgun
updated by Mensur Dlakic 3.0K • | written by shevch2009 2
0 votes
5 replies
1.3K views
What is the best way to handle "?" in the 7th column (strand) of GTF files?
fasta star ensembl gtf refseq
updated by GenoMax 16K • | written by ki 0
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0 replies
1.0K views
News: Workshop: Virtual RNA-seq Analysis, July 29–31
rnaseq workshop uconn
written by zsc25001 1
0 votes
2 replies
1.0K views
lifting over mitochondrial SNPs between reference genomes
bcftools liftover hg19 picard vcf
updated by Jeremy Leipzig 2.3K • | written by 112233 2
0 votes
3 replies
1.4K views
Merging segment CNV files
cnv
updated by Ram 4.5K • | written by avelarbio46 3
0 votes
1 reply
5.3K views
convert PLINK file to genepop
snp genome snp
updated by Noeliton 0 • | written by age00 0
1 vote
6 replies
1.5K views
How do I interpert PCA before differential expression analysis
eda deseq2 pca qc
updated by Mensur Dlakic 3.0K • | written by gogeni5529 9
0 votes
6 replies
1.3K views
RRBS (Reduced Representation Bisulfite Sequencing)
trim rrbs galore
updated by dthorbur 350 • | written by sk_24 0
0 votes
0 replies
952 views
News: Course - Population Genomics Using Ancient DNA Data - Online, September 22-26
populationgenomics adna
written by Physalia-courses 281
0 votes
0 replies
718 views
Repeat expansion VCF from ONT RU field and displayRU differences with gnomAD STR dataset repeat units
vcf strs annotation
written by ieie 2
11 votes
11 replies
7.6K views
What Are Your Most-Used Public Data Repositories?
database
updated by ATpoint 9.1K • | written by Sean Davis 2.7K
1 vote
6 replies
3.3K views
Is there a database of bioinformatics tools & databases?
ebi entrez
updated by ehaag 10 • | written by LauferVA 497
2 votes
9 replies
3.5K views
how can I search for a new release data?
next-gen microarray rna-seq homology-modelling
updated by ehaag 10 • | written by yoingchinchina 2
0 votes
3 replies
1.1K views
How to trace back found motifs from homer and fimo to bed file so that visualization in genome browser
motif
updated by GenoMax 16K • | written by EdisonJ 0
0 votes
0 replies
573 views
Problem at running Automlsa2
tree phylogenetic outgroup selection
updated by GenoMax 16K • | written by muhammadirfanulislambcsir 0
0 votes
0 replies
525 views
Comparative value conversions between fold enrichment-SHINYGO and Stringdb Score
stringdb shinygo
written by feliyon86 0
0 votes
1 reply
580 views
Output of heatmap2 tool on Galaxy
heatmap2
updated by GenoMax 16K • | written by Stefano 0
0 votes
3 replies
1.1K views
Download data from BV-BRC
bv-brc arm download bvbrc gene
updated by GenoMax 16K • | written by rica01 0
1 vote
3 replies
1.6K views
Splitting chromosomes into contigs within BAM and GTF files
samtools gtf chromosome annotation bam
updated by rfran010 174 • | written by MAB 1
0 votes
3 replies
1.1K views
concoct in metawrap binning module - use all available threads instead of requested
binning concoct metawrap module
written by shevch2009 2
0 votes
17 replies
2.8K views
Inverted TSS Enrichment Plot
atacseq deeptools
written by nmalexan 0
1 vote
1 reply
1.6K views
hg38 vs GRCh38 chr prefix
human genome reference
updated by GenoMax 16K • | written by DBScan 53
0 votes
4 replies
2.2K views
Problem using FastML for ancestral sequence reconstruction
fastml ancestral-sequence-reconstruction fastml.std
updated by christian.baumann 1 • | written by CM 0
0 votes
1 reply
805 views
Too many contigs in Spades output
spades assembly
updated by GenoMax 16K • | written by waqaskhokhar999 16
0 votes
3 replies
950 views
How to handle contamination in 16s amplicon data
16s amplicon
updated by GenoMax 16K • | written by 1769mkc 127
0 votes
12 replies
2.5K views
Strandedness issues in STAR quantification
star stranded
updated by GenoMax 16K • | written by marek.gierlinski 5
2 votes
8 replies
2.3K views
RNA-seq low quality sample in downstream analysis
mitochondrial genes rna-seq deseq2
updated by Aleksandra 19 • | written by Yingying 6
0 votes
3 replies
3.9K views
Transcript length from ensembl database
rna-seq transcriptomics
updated by colindaven 844 • | written by Dominik 0
0 votes
0 replies
532 views
Differential Abundance Analysis (for metagenomics)
metagenomics differential shotgun analysis
written by aerotolerant 0
1 vote
1 reply
791 views
Blog: Rust in Bioinformatics monthly newsletter
newsletter rust
updated by cmdcolin 448 • | written by Andrew 1
0 votes
2 replies
1.1K views
Discrepancy in gene expression between cellranger and velocyto pipeline
velocyto scvelo seurat scrna
written by sarang.chafle 0
0 votes
8 replies
1.9K views
How to solve this featureCounts problem ?
paired-end rna-seq bioinformatic quantification
updated by ATpoint 9.1K • | written by AIMAR 7
0 votes
0 replies
531 views
Help us with our Uni assignment! - fill out a form
visualisation dashboard
written by Kshirin 0
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