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3 votes
8 replies
8.1K views
Cellranger count pipestance failed: The read lengths are incompatible with all the chemistries
10x cellranger single-cell
updated by zhang • zhang • written by firestar firestar
1 vote
0 replies
801 views
Can iHS and XP-EHH be applied to targeted sequencing data?
sequencing targeted ngs ihs
written by slzr_ • slzr_
0 votes
0 replies
2.2K views
Job: Biomedical Data Scientist / Systems Biologist / Omics Data Analyst / Bioinformatician / Computational Biologist (Tulane University, New Orleans, LA)
tupulm
written by yzhou40 • yzhou40
0 votes
0 replies
684 views
Batch effect in codominant microsatellite data – how to correct
population-genetics batch-effect r microsatellite genotyping
written by shervin • shervin
0 votes
3 replies
1.5K views
UCSC genome browser negative strand positions
genomic data browser ucsc visualization genome
updated by Maximilian Haeussler Maximilian Haeussler • written by ijarne • ijarne
0 votes
1 reply
789 views
Error when computing bedtools bamtobed -bedpe
human bedtools libraries illumina bamtobed
updated by ATpoint ATpoint • written by María José • María José
0 votes
9 replies
2.4K views
Ligand-Receptor analysis using LIANA - question about specificity
scrna-seq communication cell-cell
updated by Muhammad • Muhammad • written by abedkurdi10 • abedkurdi10
0 votes
4 replies
2.1K views
PRS calculation from two sample genotype results
prs calculation
updated by Muhammad • Muhammad • written by Arun • Arun
1 vote
16 replies
8.0K views
PRS in UK Biobank - no covariate file and no phenotype file
uk biobank prs
written by Jalil Sharif • Jalil Sharif
6 votes
14 replies
5.2K views
Forum: How do you estimate time to complete a project or task?
career ngs
updated by Анна • Анна • written by sviatoslav.kendall sviatoslav.kendall
1 vote
2 replies
1.2K views
Running trajectory and velocity analysis with multiple samples
seurat velocity loom trajectory
updated by ganewo6678 • ganewo6678 • written by gogeni5529 • gogeni5529
0 votes
1 reply
619 views
NMR modelling using xplor-NIH
peptide xplor-nih nmr
written by npk107 • npk107
0 votes
5 replies
1.4K views
PCA interpretation
chip seq pca
updated by ATpoint ATpoint • written by Irving • Irving
0 votes
0 replies
956 views
News: course: Reproducibility in Bioinformatics - Only 2 seats remain!
singularity git reproducibility docker snakemake
written by Physalia-courses Physalia-courses
0 votes
0 replies
588 views
Annotate phylogenetic trees with bars or strips
otu phylogenetics r taxonomy metabarcoding
written by Luca Arbore • Luca Arbore
0 votes
2 replies
1.1K views
Identifying Long Reads Spanning Chromosomal Breakpoints
ont samtools whole-genome
updated by trausch trausch • written by Noah • Noah
0 votes
2 replies
765 views
PAML output
paml codeml selection
updated by dr_cfoster dr_cfoster • written by Morjina • Morjina
1 vote
2 replies
1.1K views
how to produce your own Nx plot
r contiguity plot nx
written by Matteo Ungaro • Matteo Ungaro
0 votes
2 replies
976 views
Interpreting inconsistency between BLAST hits and phylogenetic clustering i
tree phylogenetic blast
written by triplee0305 • triplee0305
0 votes
0 replies
624 views
News: Online course - Environmental Metagenomics - 13-17 October
illumina mags nanopore metagenomics
written by Physalia-courses Physalia-courses
0 votes
2 replies
771 views
Deg Difference in Deseq2
deg
updated by swbarnes2 swbarnes2 • written by j.k.owaresat • j.k.owaresat
0 votes
0 replies
576 views
No gene_trans_map file in CD-HIT-EST output
cd-hit-est trinity rnaseq trinotate
updated by GenoMax GenoMax • written by Olivia • Olivia
0 votes
3 replies
1.1K views
MultiQC report - unique reads from sequence counts
fastqc unique reads multiqc
written by Rozita • Rozita
0 votes
3 replies
1.0K views
NCBI Reference Genomes
genomes ncbi
updated by GenoMax GenoMax • written by anna • anna
0 votes
0 replies
665 views
GATK HaplotypeCaller missed variants in amplicon gene panel data
amplicon gene_panel haplotypecaller variant_calling gatk
written by Sofya • Sofya
0 votes
3 replies
1.5K views
Missing gem_classification.csv in Cell Ranger 9.0.0 Output Using cellranger multi with Combined Human-Mouse Reference
gem_classification 10x cellranger_multi combined_human-mouse_reference
updated by GenoMax GenoMax • written by tlallihuacan • tlallihuacan
0 votes
1 reply
783 views
Statistical analysis in a metagenomics study to validate biological differences
metagenomics analysis
updated by chen chen • written by Chijioke • Chijioke
0 votes
2 replies
1.1K views
Assembly issues
adapters assembly spades
updated by chen chen • written by anna • anna
0 votes
5 replies
1.5K views
Trouble removing adapters from sequences using cutadapt
removal cutadapt adapter primer
updated by chen chen • written by k.lagan • k.lagan
0 votes
5 replies
2.6K views
Fastp
fastp
updated by chen chen • written by nishimalhotra2612 • nishimalhotra2612
0 votes
10 replies
2.1K views
Need help using ExpansionHunter
expansionhunter
written by brianhill_nc • brianhill_nc
0 votes
0 replies
752 views
Comparing and plotting multinomial elastic net performance
roc elasticnet plotting glmnet machinelearning
written by bioinfo • bioinfo
4 votes
3 replies
1.1K views
How to add gene lable on GSEA plot
gseaplot r
updated by yura.grabovska • yura.grabovska • written by Emy Alade • Emy Alade
0 votes
0 replies
511 views
Adding New Samples to Existing VCF Files graphtyper2
graphtyper2 existing_vcf add_new_samples
written by upadhyay.maulik • upadhyay.maulik
0 votes
5 replies
1.3K views
Seurat dims and QC questions
dims
updated by 1769mkc 1769mkc • written by reddyornah • reddyornah
0 votes
1 reply
997 views
Duplication rate as reported by fastp.
fastp duplication rna-seq
updated by GenoMax GenoMax • written by Anjan Anjan
0 votes
2 replies
1.3K views
Is it appropriate to include singleton reads with paired-end datasets for low-coverage Anaplasma marginale comparative genome analysis?
assembly analysis coverage genome singletons comparative
updated by Mensur Dlakic Mensur Dlakic • written by ashiqullah024 • ashiqullah024
0 votes
1 reply
1.2K views
ComBat for Multiple Batch Effects in Methylation Data (Chip, Row, Plate)
combat methylation epic batch-correction
updated by Basti • Basti • written by Eliveri • Eliveri
0 votes
1 reply
654 views
Using a Seurat object to create a cellchat object
cellchat
written by m.sharghi • m.sharghi
0 votes
0 replies
627 views
WGCNA - High R2 and Mean connectivity at low soft power
wgcna
written by Leonard Barnabas • Leonard Barnabas
0 votes
0 replies
899 views
How do I combine or integrate my VDJ data for TCR and BCR with seurat object?
vdj screpertoire seurat
updated by GenoMax GenoMax • written by Jaber • Jaber
0 votes
4 replies
2.8K views
DGE analysis in Seurat using paired samples per donor ?
paired seurat dge sample
written by Picasa Picasa
1 vote
3 replies
1.5K views
RNA-seq: TPM batch effect correction
tpm combat rna-seq
updated by rfran010 • rfran010 • written by Samuel • Samuel
0 votes
3 replies
1.0K views
Error running pbrun fq2bam: No space left on device
disk space
updated by DBScan • DBScan • written by Ritu • Ritu
2 votes
3 replies
2.4K views
How to find the annotation file for GPL16956 platform of Arraystar human lncRNA microarray V3 (Probe Name Version)?
annotation lncrna microarray probe
updated by GenoMax GenoMax • written by daphneolivia39 • daphneolivia39
0 votes
5 replies
1.2K views
Statistics for bins
data shotgun
updated by GenoMax GenoMax • written by shevch2009 • shevch2009
0 votes
4 replies
1.2K views
twist exome panel analysis
twist exome
updated by GenoMax GenoMax • written by 1769mkc 1769mkc
0 votes
1 reply
874 views
Run hifiasm without error correction module?
hifiasm assembly wgs nanopore genomics
updated by shelkmike shelkmike • written by Mark • Mark
0 votes
1 reply
656 views
PhageTerm Galaxy
error phageterm genomics
updated by GenoMax GenoMax • written by NIkita • NIkita
0 votes
1 reply
643 views
Demultiplexing of snAtcSeq data using demuxlet gives an empty output
genotype demuxlet scatacseq demultiplexing
updated by GenoMax GenoMax • written by Bioiris • Bioiris
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