chromosome ideogram
I'm looking to create a chromosome ideogram similar to the one shown here. Does anyone have experience or suggestions on how to do this?The author's description is as follows: 'We visually present the shared genomic loci annotated by cytogenetic regions based on the GRCh37 cytoband (Fig. 2a).' However, I'm still confused about how to generate such a plot.
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cmdcolin
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zhangmyharper •
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zhangmyharper •
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Prior threads that may be of interest:
Ideogram.js: a JavaScript library for chromosome visualization
Visualizing human genomic loci
and https://bernatgel.github.io/karyoploter_tutorial/
I have a list of tools tagged "ideogram" here https://cmdcolin.github.io/awesome-genome-visualization/?latest=true&tag=Ideogram
that particular figure that you posted looks very similar to output of the PhenoGram tool, but it is an older web server / ruby based tool. It's probably getting a little "old" now, most people would probably reach for an R or Python based tool these days I would guess. Personal note: I think it's a real travesty that people don't say or cite what visualization tools they use