Download data from BV-BRC
Hello.
I am trying to download this table: https://www.bv-brc.org/view/SpecialtyGeneList/?eq(property,%22Antibiotic%20Resistance%22). As you can see, it has almost 80M rows. When I use the download button on the website, it only downloads the first 250K rows of the table.
Has anyone managed to do something similar? I have tried their CLI tool but for some reason it is not working for me.
Thanks.
-Ricardo
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Looks like the web table interface only allows selection of a maximum of 10000 rows. If you managed to download 250K, you must have just clicked on the "Download" button. Are you certain they allow bulk downloads of data? Some sites don't.
I do not know. But I would expect some how to be able to download more. I need to find the AMR found in ~400 pathogens.
They offer a FTP site. Take a look around. https://www.bv-brc.org/docs/quick_references/ftp.html
They do not support
httpaccess to that FTP site so you will need to use a FTP client or use command line FTP access.