This is a test version of Biostars. For the public version, visit https://www.biostars.org.
1 vote
2 replies
1.4K views
Why do these two variants appear to result in the same amino acid change when annotated by snpeff, but are annotated differently in clinvar
clinvar
written by curious curious
0 votes
0 replies
778 views
Job: Job Vacancy Announcement - Health Scientist Administrator (Program Officer) - Translational Genomics for Mental Health (TGMH)
program-officer translational-genomics
updated by Ram Ram • written by NIMH Search • NIMH Search
0 votes
0 replies
601 views
Forum: tutorial for carrier screening analyses?
carrier-screening
updated by Ram Ram • written by Akos • Akos
1 vote
1 reply
991 views
Get VCF-format positions from coding positions
ngs dna vcf
updated by Ram Ram • written by captainlabman • captainlabman
0 votes
1 reply
685 views
Visualize module preservation results
module-preservation wgcna
updated by Ram Ram • written by Gail • Gail
0 votes
0 replies
559 views
Does anyone know of more tools like Enhancer Atlas?
transcription-factor enhanceratlas
updated by Ram Ram • written by Rajashree • Rajashree
1 vote
2 replies
2.2K views
msa to use in alphafold
alphafold msa
updated by dthorbur dthorbur • written by andreapamela.aguilar • andreapamela.aguilar
0 votes
1 reply
2.1K views
Data scaling in single-cell RNAseq - sample-wise or on the full set?
scrna-seq seurat
updated by bk11 • bk11 • written by e.r.zakiev • e.r.zakiev
0 votes
3 replies
1.5K views
Get the gene functions specific for clusters (RNA seq)
rnaseq heatmap clustering
updated by jv jv • written by Diana • Diana
1 vote
2 replies
2.0K views
Scaffolding contigs assembled with hifi reads
genome scaffolding hifi
written by stjerne • stjerne
0 votes
1 reply
808 views
breed purity test analysis
breed-purity
updated by Ram Ram • written by m90 • m90
0 votes
2 replies
1.0K views
How can I view the information in an alternative allele?
vcftools bcftools vcf annovar
updated by Ram Ram • written by iarmir • iarmir
1 vote
3 replies
1.5K views
Conditional coloring of heatmap
genomics heatmap complexheatmap single-cell
updated by Ram Ram • written by ilomilo • ilomilo
0 votes
3 replies
970 views
GCP Snakemake
snakemake gcp
updated by GenoMax GenoMax • written by Fadwa • Fadwa
0 votes
1 reply
825 views
cellranger process could not be killed
cellranger linux single-cell
updated by Ram Ram • written by keke • keke
0 votes
1 reply
1.1K views
GATK's CNV-caller output, genotype code?
gatk cnv ngs
updated by Rui Xu • Rui Xu • written by Joel Wallenius Joel Wallenius
1 vote
5 replies
15K views
Relatedness vs relatedness2 from vcftools give different results
relatedness kinship
updated by mirkocelii • mirkocelii • written by Sharon Sharon
0 votes
0 replies
459 views
Correlating Chip-Seq and proteimics results
chip-seq correlations proteomics
written by Assa Yeroslaviz Assa Yeroslaviz
0 votes
1 reply
800 views
BLASTx Number of Matches
blastx blast
updated by Philipp Bayer Philipp Bayer • written by suyuqi • suyuqi
1 vote
7 replies
2.7K views
Increased proportion of heterozygous SNPs when RNAseq reads are mapped against a transcriptome
transcriptome snp rna-seq
updated by Ram Ram • written by thal • thal
0 votes
7 replies
1.9K views
What tools exist for filtering hundreds of VCFs (and annotated into VCFs in txt format) with GUI?
varaft vcf-miner filtering annotation
updated by Jeremy Leipzig Jeremy Leipzig • written by iarmir • iarmir
0 votes
1 reply
727 views
Differential Expression using Scanpy
single-cell
written by Skamboj • Skamboj
0 votes
4 replies
2.4K views
Differing p-value cutoffs of limma derived DEGs in volcanoplots
timecourse rnaseq limma deg
written by JirMan • JirMan
0 votes
2 replies
809 views
Correcting Farm effects
farm-effect
updated by Ram Ram • written by Jeyamalar • Jeyamalar
0 votes
2 replies
1.1K views
I ran STAR, but essential output files did not generate.
star
updated by Ram Ram • written by ZZOYEA • ZZOYEA
1 vote
5 replies
1.7K views
How quickly can an SRA submission proceed directly from S3
sra
written by Jeremy Leipzig Jeremy Leipzig
0 votes
6 replies
1.6K views
Trimmomatic - To trim the low quality reads
trimmomatic
written by sainavyav22 • sainavyav22
0 votes
0 replies
715 views
Looking for ichorCNA tutorial for Tumor fraction estimation?
fraction ichorcna cfdna tumor hmmcopy
written by kabir.deb • kabir.deb
0 votes
1 reply
1.5K views
Extracting complete supplementary alignments for long reads from a bam file
ont split reads alignment
updated by Pierre Lindenbaum Pierre Lindenbaum • written by aacomeau • aacomeau
0 votes
3 replies
1.1K views
snippy-multi bad Id error
snippy snippy-multi
updated by Ram Ram • written by sameenahmad1 • sameenahmad1
0 votes
1 reply
1.3K views
What is the data requirement for shotgun metagenome analysis of soil samples from plastic land-filling, coal mining, and petroleum oil refineries fields?
shotgun-metagenome species-level binning gtdbk data-requirement
updated by GenoMax GenoMax • written by mathavanbioinfo mathavanbioinfo
0 votes
0 replies
737 views
ONT long reads and IGV
long-reads igv ont
updated by Ram Ram • written by Kay • Kay
0 votes
6 replies
3.3K views
RNA seq, correlation, gene expression, STAR count
star correlation rna-seq
written by Rob • Rob
0 votes
2 replies
1.4K views
Trimmomatic
trimmomatic
updated by Ram Ram • written by Ashok • Ashok
0 votes
1 reply
988 views
Change default values for maximum amplicon size in STAR?
star transcriptomics rna-seq
updated by ATpoint ATpoint • written by andrebolerbarros • andrebolerbarros
0 votes
5 replies
1.5K views
How to assess the quality of the assembly of unmapped reads ?
pangenome iterative-assembly
written by Sony Nguyen • Sony Nguyen
0 votes
2 replies
973 views
Biological Data Management
biological-data-management
updated by Matthias Zepper Matthias Zepper • written by m90 • m90
0 votes
3 replies
1.3K views
Forum: My Project
project cli md-simulations molecular-docking
written by Ajay A Shettigar • Ajay A Shettigar
0 votes
0 replies
655 views
Heatmap with different comparisons
deseq2 heatmap
updated by Ram Ram • written by san96 • san96
1 vote
2 replies
1.2K views
Impossible gene fusion annotations
star rna-seq gene-fusion
updated by Ram Ram • written by Getting there Getting there
0 votes
0 replies
687 views
News: BLAST FASTA Files Will No Longer Be Available on the FTP Site Effective April 2024
ncbi blast
written by PeterC_NCBI • PeterC_NCBI
0 votes
14 replies
2.7K views
How to save the results of norm to txt
bcftools variant-calling vcf
updated by Ram Ram • written by Serij´s • Serij´s
0 votes
1 reply
757 views
Questions about bigwigcompare on Galaxy
galaxy bigwigcompare
updated by Ram Ram • written by An • An
0 votes
10 replies
2.3K views
How to scrape this MPMP database?
rvest html web-scrapping
updated by Ram Ram • written by rohitsatyam102 rohitsatyam102
0 votes
1 reply
990 views
MEGAN6
megan6
updated by AG • AG • written by Kárita • Kárita
0 votes
3 replies
1.0K views
Heatmap for significant DEGs
galaxy rna-seq
updated by Ram Ram • written by ghasemi.atefeh.ge • ghasemi.atefeh.ge
1 vote
0 replies
837 views
warning[vg::giraffe]: Cannot cluster reads with a fragment distance smaller than read distance
giraffe sim vg
written by cassiwatt • cassiwatt
0 votes
3 replies
1.5K views
vg sim error: [insert_gbwt_path()] path name already exists:
vg
written by cassiwatt • cassiwatt
1 vote
1 reply
1.7K views
How to get a Newick file that contains the internal node number
ggtree phylogeny tree
updated by dthorbur dthorbur • written by Angels • Angels
0 votes
2 replies
1.2K views
Problem with vg autoindex with phased VCF
vg
written by mirko1998coggi • mirko1998coggi
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