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0 votes
0 replies
1.7K views
Job: Computational biologist / Bioinformatician (m/f/d) / (PhD), University of Oldenburg, Germany
medical-genetics research-position phd
updated by Ram 4.5K • | written by AHP 0
0 votes
2 replies
1.1K views
Metagenomics analysis
sedidna galaxy ceramics metagenomics
updated by Mensur Dlakic 3.0K • | written by Ayda Ecem 0
0 votes
0 replies
668 views
News: Online course : Meta-Analysis in R
r meta-analysis statistics
updated by Ram 4.5K • | written by Physalia-courses 281
1 vote
5 replies
2.8K views
Physical Protein size
proteomics databases
updated by Michael Dondrup 5.6K • | written by Gabriel 18
0 votes
2 replies
1.0K views
Protein modeling
protein-modeling alphafold2
updated by GenoMax 16K • | written by Curious 1
0 votes
3 replies
1.3K views
Differential gene expression design using Deseq2
rna-seq
updated by swbarnes2 1.5K • | written by drajangirija 1
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1 reply
721 views
selscan --xpehh
selscan
updated by Ram 4.5K • | written by sevda 0
0 votes
6 replies
1.8K views
A lot of unknown/weird gene names after alignment with cellranger or starsolo
cellranger
written by Tolga 3
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8 replies
2.1K views
Can somebody guide me to setting up FAN-C module for hic analysis in my ubuntu ?
fanc hi-c hic fan-c
written by naveedhasan2000 1
0 votes
5 replies
3.1K views
How to collapse leaves with the same name in ETE3 tree?
python ete3
updated by Yogesh 0 • | written by Andrzej Zielezinski 1.1K
0 votes
5 replies
1.8K views
Generate BED file
bed
written by daffodil 1
0 votes
1 reply
1.7K views
How to normalise Bulk RNA-seq data to account for transcript length, coverage depth, library size and batch effects?
rna-seq normalisation
updated by ATpoint 9.1K • | written by DJHS 0
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2 replies
2.1K views
EdgeR: upregulated with respect to what group?
upregulated edger
updated by Gordon Smyth 916 • | written by bioinfo2345 4
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1 reply
1.5K views
Correct biomart version for TCGA data
tcga sarek biomart
updated by Maxime Garcia 41 • | written by ramiro.barrantes 6
0 votes
2 replies
952 views
Decision of Random Effect and Random Slope in rare cases
lmm model
written by manjumoorthy95 6
0 votes
7 replies
2.5K views
Is there a program to average read counts from technical replicates?
rna-seq edger
updated by Gordon Smyth 916 • | written by Tota 2
0 votes
5 replies
1.8K views
How do I work out which condition the genes are down-regulated in?
edger rna-seq glm
updated by Gordon Smyth 916 • | written by Tota 2
0 votes
2 replies
846 views
Can Novor.cloud be used for DIA analysis?
novor dia archaeology ancient-protein
written by xq241 0
0 votes
1 reply
2.4K views
positive and negative Fold Change glmLRT test
rna-seq log2fc glmlrt differential-expression
updated by Ram 4.5K • | written by debitboro 27
0 votes
2 replies
923 views
Question regarding transcript quantification with hybrid seq
short-read salmon long-read hybrid-seq
updated by jared.andrews07 1.9K • | written by shinyjj 7
1 vote
1 reply
1.6K views
logFoldChange computed by EdgeR different from naive log2FCcomputed based on reads
edger fold-change
updated by Gordon Smyth 916 • | written by ZheFrench 60
0 votes
0 replies
562 views
PAML error
paml
written by Pit 0
0 votes
0 replies
587 views
Calculate mean DP4 in a multisample vcf
dp4 vcf bcftools
updated by Ram 4.5K • | written by avelarbio46 3
0 votes
2 replies
1.1K views
Gene database
genomic databases
updated by Ram 4.5K • | written by Curious 1
0 votes
1 reply
743 views
What does it mean when genes has same Hugo ID in different species?
orthologs hugoname geneid
updated by GenoMax 16K • | written by ToTheMoon 0
0 votes
3 replies
18K views
Issues with Merging Seurat Objects: Multiple Counts in Assays Layer
seurat
updated by Felipe 4 • | written by dxj294 0
0 votes
1 reply
716 views
Cannot find WGCNA module preservation documentation
preservation wgcna
written by firstdoctor1 0
0 votes
1 reply
752 views
eQTL analysis of GWAS summary statistics, missing GT values
genomics eqtl gwas
updated by Ram 4.5K • | written by Orlando 0
0 votes
0 replies
723 views
Evaluate if distribution of interest genes (X) against non-interested genes (Y) or empirical theorical distribution
r deg
written by PBC 1
0 votes
2 replies
1.0K views
Extract information of mapped reads bam files
mapped bam alignment
updated by Istvan Albert 10K • | written by sata72 0
0 votes
0 replies
560 views
Running ASCAT without matched normal sample
ascat baf cnv
written by Riccardo 1
0 votes
8 replies
11K views
Notepad and word will not read Fastq or FASTA files
software-error fastq
updated by webmaster 0 • | written by paul.sillence 0
0 votes
5 replies
1.9K views
Consensus sequences producing stop codons when translated
bcftools ensembl gene samtools fasta
updated by Michael Dondrup 5.6K • | written by hemr3 1
0 votes
3 replies
970 views
Multimapped and unique mapped for BAM file of RRBS data
multimapped bam rrbs
updated by ATpoint 9.1K • | written by sata72 0
0 votes
2 replies
942 views
Would you recommend me any tool to assign protein family membership to an aminoacidic fasta file?
protein-annotation fasta
updated by Dunois 301 • | written by v.berriosfarias 14
1 vote
3 replies
1.3K views
Guidance for connecting a rare phenotype to a genotype in a small family sample
vcf wgs fst
updated by Ankit 52 • | written by tac-a-cat 1
0 votes
3 replies
2.3K views
eggNOG versus Diamond blastp
diamond eggnog protein functional
updated by Dunois 301 • | written by young_bioinformatician 25
0 votes
7 replies
1.6K views
How to predication/annotation trans-splicing in genome
trans-splicing genome annotation mitochondrial
written by oasiswho 0
0 votes
3 replies
1.2K views
Snakemake paralellize
snakemake order
updated by Eric Lim 217 • | written by Fadwa 1
0 votes
0 replies
824 views
DEXSeq design formula & estimating dispersion
rna-seq deseq dexseq exon dispersion
written by hofman.bartlomiej 0
0 votes
2 replies
1.0K views
MiRNA data analysis
mirna mirdeep2
updated by Kevin 10 • | written by Srinka 2
0 votes
3 replies
1.5K views
GO enrichment plot with dotplot strange axis
enrichment go plot
updated by bk11 312 • | written by Picasa 71
1 vote
3 replies
1.8K views
Difference between mRNA and transcript record types in GFF3 and GTF
gff3
updated by i.sudbery 2.3K • | written by William 540
0 votes
2 replies
828 views
bcl2fastq
bcl2fstq
written by daffodil 1
0 votes
3 replies
1.9K views
Submitting NGS data to ArrayExpress via Aspera
ebi aspera arrayexpress
updated by GenoMax 16K • | written by Meisam 25
0 votes
1 reply
823 views
coding sequence
biology sequence molecular coding gene
updated by Pierre Lindenbaum 17K • | written by Sijjil 0
0 votes
6 replies
2.1K views
Docker for Bioconductor Packages
docker bioconductor
updated by colindaven 844 • | written by S 0
1 vote
1 reply
1.5K views
WisecondorX (NIPT) np.array( ValueError)?
numpy ngs wisecondorx nipt
updated by GenoMax 16K • | written by Clark_BioMorgan 5
0 votes
2 replies
1.7K views
How to manage GO terms for metagenomics
metagenome gene-ontology go
updated by geneontologyhelp 57 • | written by young_bioinformatician 25
2 votes
7 replies
4.8K views
Why is local BLAST so slow? (yet another one of these questions)
blast ncbi sequence
written by mykle hoban 4
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