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0 votes
6 replies
1.5K views
Find Large-scale CNVs in whole exome sequencing
wes scrna-seq cnv
written by fifty_fifty 10
1 vote
7 replies
2.1K views
Did the stability of the transcriptome be affected by factors such as pathological conditions, diet?
transcriptome
updated by Yogi 7 • | written by GrantS 2
0 votes
0 replies
672 views
News: Course live online Intro Bayesian Analyses, March 4-8, 2024
r python bayesian
written by Sole 0
0 votes
2 replies
1.1K views
Extracting mutation information from a VCF file.
biopython vcf phylogenetic usher
updated by Pierre Lindenbaum 17K • | written by realtreeecat 0
0 votes
1 reply
600 views
De-novo transcriptome
de-novo
updated by Ram 4.5K • | written by bala 0
0 votes
7 replies
2.3K views
Three fastq files
fastq sra cellranger
updated by swbarnes2 1.5K • | written by charms.charms 2
0 votes
4 replies
1.5K views
How to fix DESeq2 Error in checkFullRank(modelMatrix)
deseq2
updated by i.sudbery 2.3K • | written by marco.barr 22
0 votes
3 replies
1.2K views
Can I run a blast for each contig in my contigs file?
blast
updated by GenoMax 16K • | written by roberto.bonnellya 0
0 votes
1 reply
1.2K views
How to make separate plots in Monocle3 using combined control and treatment samples
monocle3 plot_cells
updated by Ram 4.5K • | written by alwayshope 4
0 votes
0 replies
444 views
Set pentanucleotide context in dndscv
dndscv
written by vswamy 0
0 votes
6 replies
2.3K views
GO and KEGG
go bulk-rna-seq rstudio kegg
updated by jv 187 • | written by matteo.levorato 0
0 votes
2 replies
838 views
Internal controls/ Reference Samples for Nanopore
nanopore
updated by dthorbur 350 • | written by pixie@bioinfo 150
0 votes
3 replies
1.7K views
Merge seurat list
merge
updated by GenoMax 16K • | written by Long 1
0 votes
1 reply
953 views
What could be a better K-mer for my WGS assembly task using ABySS, with my current hardware profile.
abyss genome k-mer assembly
updated by shelkmike 201 • | written by Vijith 10
0 votes
3 replies
1.2K views
How to show that correlation from one method is more significant than other method?
p-value model-performance significance correlation
updated by Shred 163 • | written by rheab1230 15
0 votes
2 replies
1.4K views
Pymol movie - ligand and receptor binding.
pymol protein structure pdb
written by Hansen_869 8
0 votes
1 reply
1.3K views
CNVKit .cnr to cns conversion algorithm
cnvkit cnv
updated by francisco 0 • | written by Jade 0
0 votes
4 replies
2.6K views
How can I call somatic CNV in tumor samples with no normal samples?
r cnvkit copy-number ascat
updated by francisco 0 • | written by Saurabh 0
0 votes
4 replies
3.0K views
Creating a csv in a specific format from FASTQ file names
nf-core bash
updated by Mahmoud.Abdallah 0 • | written by jamie3355 0
1 vote
7 replies
12K views
Remove adaptaters from ONT reads : An alternative to Porechop ?
minion promethion porechop nanopore ont oxford
updated by Michael Dondrup 5.6K • | written by Rox 146
0 votes
3 replies
3.1K views
How I can get percent identity matrix from clustalw or clustalo?
clustalo clustalw msa multiplesequencealignment pairwise
written by Jiun 0
0 votes
2 replies
1.8K views
What is the best GWAS tool to use for a very large cohort data (UK Biobank data)?
bolt-lmm gwas regenie saige hail
updated by GenoMax 16K • | written by lsy9 2
0 votes
7 replies
2.2K views
Split large deletion D in CIGAR string and filtering reads
cigar reads
updated by Pierre Lindenbaum 17K • | written by marco.barr 22
0 votes
2 replies
1.4K views
How to do DESeq2 on Kallisto Data
unfolded kallisto deseq2 reponse protein
updated by dsull 781 • | written by Aaliya 0
0 votes
1 reply
1.1K views
Conversion Issue with bcl2fastq2
bcl2fastq2 novaseq6000
updated by Ram 4.5K • | written by Christopher 1
0 votes
3 replies
1.2K views
Biologic Images processing: Immunofluorescences
microscope image immunofluorescence developmental processing
updated by hq.huang11.6 1 • | written by Francesco 0
0 votes
1 reply
934 views
Extracting observations from one dataframe to populate another
r tibble stringr dplyr tidyr
updated by Ram 4.5K • | written by Rachel 0
0 votes
5 replies
2.2K views
Mapping vs Alignment mode in Salmon
salmon alignment mapping rna-seq
written by Sowmya 0
0 votes
3 replies
1.7K views
How to exclude sex-dependent genes from RNA-Seq?
rna-seq deseq2
updated by ATpoint 9.1K • | written by bxxxmxxxx 1
0 votes
1 reply
882 views
fold change value
proteomics gene-expression
updated by Ram 4.5K • | written by Giovana 0
0 votes
9 replies
2.6K views
Tool: Generate unit-tested, ready-to-run pipelines using natural language prompting
ngs pipeline genomics cloud ai
written by Kevin 10
0 votes
12 replies
4.0K views
Integrated genes from bulk RNA seq and ATAC seq
atac-seq bulk-rna
updated by Ram 4.5K • | written by Chris 36
0 votes
4 replies
1.7K views
How to find SNP locations in assemblies other than hg38
hg19 snp dbsnp
updated by Ram 4.5K • | written by Bosberg 5
0 votes
11 replies
2.7K views
Remove X in row name with only number
gsva
updated by Ram 4.5K • | written by Chris 36
0 votes
5 replies
1.5K views
HPRC sample information (human Pangenome)
ont pangenome nanopore hprc
updated by GenoMax 16K • | written by turcoa1 0
0 votes
2 replies
1.4K views
PyMol vs DS visualizer for publication images
dsvisualizer pymol
updated by Wayne 208 • | written by Stroodes 1
0 votes
1 reply
640 views
single cell annotation of human data using mouse data
single-cell singler seurat
updated by Ram 4.5K • | written by shersky 0
1 vote
2 replies
1.1K views
Tumour purity and ploidy estimation
copy-number whole-exome-sequencing
written by bp22 8
1 vote
4 replies
1.6K views
What can cause broken read-pairs (chimeric read-pairs) in a sequencing run?
qc
written by William 540
0 votes
0 replies
644 views
Interpret mean variance trend plot
r voom
written by anasjamshed 14
0 votes
0 replies
664 views
GSEA or PEA with pearson correlations instead of log2foldchanges
gsea enrichment-analysis pea cellrank
updated by Ram 4.5K • | written by Tolga 3
0 votes
4 replies
1.5K views
average of one column for each category of another column
r
updated by Ram 4.5K • | written by sata72 0
2 votes
3 replies
5.0K views
is oxford nanopore technology data paired or single end sequencing?
oxford-nanopore dna rna
updated by Ram 4.5K • | written by Alewa 19
0 votes
1 reply
1.2K views
RNA-Seq expression analysis
rna-seq nextflow heatmap gene-expression
updated by dthorbur 350 • | written by Ric 44
0 votes
1 reply
2.0K views
News: FINAL CALL: RNA-Seq Data Analysis Workshop (March 11 - 14, 2024 in Berlin, Germany)
ngs rna-seq workshop
written by David Langenberger 1.1K
0 votes
1 reply
970 views
Network Analysis of Microbiome Data: MicrobiomeAnalyst vs. Cytoscape
microbiomeanalyst
written by ohtang7 4
0 votes
1 reply
692 views
Sequence alignment
basecall
updated by Mensur Dlakic 3.0K • | written by Emmanuel 1
3 votes
4 replies
3.1K views
Why employ normalization methods, and how can they be utilized in DEG analysis?
r degs normalization
written by wyt1995 4
0 votes
0 replies
571 views
IC50 values for enumerated SMILES
machine_learning ic50 smiles_enumeration data_augmentation
written by Sneha 0
0 votes
1 reply
1.2K views
Samtools not installing properly on mac
umitools samtools ngs
updated by ATpoint 9.1K • | written by Sarah 0
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