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0 votes
4 replies
1.7K views
allele matching between identical genotypes
haplotyping plink vcf gatk varaint
written by rj.rezwan • rj.rezwan
1 vote
0 replies
1.0K views
Herald: The Biostar Herald for Wednesday, January 31, 2024
herald
written by Biostar Biostar
0 votes
0 replies
501 views
Correlating all other genes with a hub gene - measuring the expression of a particular gene
r rna-seq
updated by Ram Ram • written by dzisis1986 • dzisis1986
0 votes
4 replies
1.1K views
Help with ABySS use
abyss
written by sainavyav22 • sainavyav22
0 votes
10 replies
1.9K views
Cannot distinguish R1 or R2
fastq
updated by GenoMax GenoMax • written by Long • Long
0 votes
2 replies
1.4K views
Aligning a sequence with multiple sequences in LASTZ
lastz alignment
updated by Dave Carlson Dave Carlson • written by Арсений • Арсений
0 votes
1 reply
566 views
Need help on computational analysis of Erythrocytosis or polycythemia
polycythemia erythrocytosis myeloproliferative-neoplasms chuvash-disease
updated by andrebolerbarros • andrebolerbarros • written by Awais • Awais
0 votes
2 replies
1.3K views
sweepfinder2
sweepfinder2
written by sevda • sevda
0 votes
1 reply
1.1K views
GEO database
series datasets
updated by jv jv • written by mrashad mrashad
0 votes
2 replies
939 views
Bulk Download Genpept Human Readable Files
download peptide
written by cs • cs
0 votes
0 replies
554 views
genomation
r genomation
updated by Ram Ram • written by daffodil • daffodil
0 votes
5 replies
2.3K views
freebayes on nanopore reads
freebayes nanopore
written by Nodilan • Nodilan
0 votes
3 replies
2.4K views
1000G Reference Panel Hg38 Michigan Imputation Server
reference-panel hg38 1000g
written by yvyu • yvyu
1 vote
3 replies
1.4K views
Differential expression analysis of lncRNA
expression lncrna counts
written by Bushra Bibi Bushra Bibi
0 votes
2 replies
1.1K views
Interpreting 3D refine results
3drefine
updated by Joe Joe • written by Curious • Curious
0 votes
11 replies
6.1K views
Trimming nanopore reads
trim nanopore
updated by GenoMax GenoMax • written by Nodilan • Nodilan
0 votes
4 replies
2.4K views
Packages don't update, but no error or warning is thrown
bioconductor
written by gernophil • gernophil
1 vote
8 replies
2.7K views
PCA plot interpretation (single population)
pca gwas pruning
updated by AH • AH • written by Shane • Shane
0 votes
3 replies
2.0K views
filter reads with >90% match
bam long-reads alignment
written by anuradharavi10 • anuradharavi10
0 votes
3 replies
1.4K views
Mapping paired end
dna-seq mapping umi umitools ngs
written by Sarah • Sarah
0 votes
3 replies
1.6K views
how to download BF ,CC and MF
proteomics
updated by geneontologyhelp • geneontologyhelp • written by Bioinfo • Bioinfo
0 votes
2 replies
1.0K views
move fasta and fastq files with the same name folder
for loop
written by cabraham03 • cabraham03
1 vote
18 replies
6.6K views
How can I identify single-copy genes in a specific genome?
genome single-copy genes
updated by Dunois • Dunois • written by Hamtaro • Hamtaro
0 votes
5 replies
1.5K views
multiple alignment
genedoc alignment
updated by Mensur Dlakic Mensur Dlakic • written by Fulvia • Fulvia
0 votes
0 replies
495 views
scRNA-seq atlas differential pathway activation
scrna-seq
written by jv jv
0 votes
3 replies
1.5K views
Attempting to generate a sam file that can be converted to a bam file using samtools.
minimap2 samtools
updated by GenoMax GenoMax • written by dlera.lozano • dlera.lozano
1 vote
9 replies
2.2K views
Using VEP annotation output as the input for a second VEP annotation
annotation vep vcf
written by Arton • Arton
0 votes
0 replies
863 views
Seeking blacklist (exclusion list) for S. cerevisiae in ChIP-seq analysis
qc blacklist chip-seq
written by kalavattam • kalavattam
0 votes
1 reply
1.2K views
Optimal MACS2/3 configuration for paired-end ChIP-seq data: `-f BAM` versus `-f BAMPE`
macs3 peak-calling macs2 chip-seq
updated by ATpoint ATpoint • written by kalavattam • kalavattam
1 vote
21 replies
3.7K views
Expression analysis of LncRNA from RNA-seq data
expression lncrna
written by Bushra Bibi Bushra Bibi
1 vote
0 replies
808 views
News: Cellosaurus release 48 is available
cell-line biocuration cellosaurus knowledgebase
written by Amos Bairoch • Amos Bairoch
0 votes
1 reply
1.0K views
Obtain rsID GWAS variants (9M)
dbsnp gwas rsid
updated by Ram Ram • written by spolo • spolo
0 votes
1 reply
678 views
NCBI entrez-direct C++ Exception EUTILSAPP(CException::eInvalid)
ncbi
updated by GenoMax GenoMax • written by Abdullah • Abdullah
0 votes
2 replies
1.1K views
Can I choose the sanger sequencing?
mutation sanger-sequencing
updated by Joe Joe • written by Sabine Sabine
0 votes
0 replies
566 views
Human vs Mouse - Homologues
rnaseq homology
written by andrebolerbarros • andrebolerbarros
0 votes
1 reply
1.1K views
DESeq2 and Gene Set Enrichment Analysis
deseq gsea
updated by ATpoint ATpoint • written by noerm123 • noerm123
1 vote
2 replies
3.3K views
Methods to analyze EM-seq data
methylation wgbs em-seq
updated by Ram Ram • written by Lluís R. Lluís R.
0 votes
1 reply
642 views
How to Annotating Human Genomic Variants for Disease Associations?
r variant-annotation gwas
updated by Ram Ram • written by octpus616 • octpus616
0 votes
8 replies
2.4K views
Blastn for all bacteria genomes; create the db
blast blastn
updated by GenoMax GenoMax • written by davidmaimoun • davidmaimoun
0 votes
0 replies
670 views
News: Online course: Genome Assembly Using Oxford Nanopore Sequencing
genome-assembly nanopore
updated by Ram Ram • written by Physalia-courses Physalia-courses
0 votes
0 replies
736 views
Tools for network alignement
graph network r netcom igraph
updated by Ram Ram • written by Arindam Ghosh Arindam Ghosh
0 votes
8 replies
3.2K views
Hello, I have differential ATAC-seq from control and diseased cells (H3K27ac mark as chromatin mark) and wondering how to call enhancers using ROSE algorithm. Any suggestion
super-enhancers enhancers
updated by jared.andrews07 jared.andrews07 • written by Manhezz • Manhezz
0 votes
2 replies
1.1K views
Suitable tool for mapping NGS data from enrichment experiment on combinatorial library
salmon ngs bwa combinatorial-library
written by Filip • Filip
0 votes
1 reply
686 views
combined bam files
rna-seq bam
updated by biofalconch biofalconch • written by adi.gershon1 • adi.gershon1
0 votes
0 replies
1.0K views
How to dock compounds with Si to a protein using Autodock vina?
docking ligands molecular
updated by GenoMax GenoMax • written by Akhilesh • Akhilesh
0 votes
1 reply
713 views
EnhancedVolcanop plot using GSE data
microarray gse enhancedvolcano
updated by bk11 • bk11 • written by mnx0723 • mnx0723
0 votes
0 replies
610 views
"Conformer generation is disallowed since too many atoms" or "too flexible" in PubChem 3D conformer. Can I perform docking with such compounds?
docking ligands
updated by GenoMax GenoMax • written by Akhilesh • Akhilesh
0 votes
0 replies
723 views
Monocle3 cell data set object (grabbing values from one column)
scrna-seq monocle3 celldataset
updated by Ram Ram • written by seattlescientist_01 • seattlescientist_01
0 votes
0 replies
397 views
Design microsatellite primers
microsatellite-primer molecular-identification
updated by Ram Ram • written by sanjana.f • sanjana.f
0 votes
1 reply
718 views
Which level does protein bioinformatics work at?
protein
updated by Michael Dondrup Michael Dondrup • written by 4fzcgueyp5 • 4fzcgueyp5
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