Dear biostars-community! I am still very new to the field of RNAseq analysis and I struggle with interpretation of the mean-variance trend. Specifically, I am …

I have data like: ![hmap and plot][1] I already draw heatmaps like: ![hmap][2] Is it possible to draw a volcano plot of this data without …

Hi, I have a foreground-background plot using limma plotFB function for one array. I couldn't find any detailed resource of how to interpret this plot. …

I’m working with some data with large BCV (indicated below). I made my design matrix accounting for all the covariates I possibly could with the …

I have plotted two PCA plots showing expression distribution w.r.t all DEGs and immune DEGs. So, what does the difference in PCA plots signify? A …

Hi, Can someone point out a tutorial which helps me to generate the **Kimura substitution plots** from eukaryotic genomes (soft masked - Repeatmasker) ? I …

Hi, I am beginner in analyzing GEO array database. I got this Mean-variance trend plot result while I assess one of GEO series array data …

I have developed these plots by using scRNA Single-cell data and I want to interpret these plots and compare A and B with the other …

Hello, I did a differential expression analysis of RNA seq data (normalized RSEM) from TCGA with VOOM and another time with Limma trend , but …

I am having trouble interpreting some of my multiqc plots for my quality assessment of my fastq files (E. coli samples). I have the following …