Is it possible to draw volcano plot without p values
I have data like:
I already draw heatmaps like:
Is it possible to draw a volcano plot of this data without a p-value?
p-value
log2fold
plot
• 2,253 views
•
link
updated
by
Ram
•
written
by
anasjamshed
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Unequally distributed volcano plot
written by Vinesh •Hello I am performing differential gene expression using DESeq2 package. The volcano plot showed unequal distribution between upregulated and downregulated genes. The script used for …
-
Interpreting MA plot - DEG
written by NEWBIE •Hi How can this gene PALB2 have such a strong p value, and not a very high log fold change, but also has lower end …
-
manhattan plot with vcf information
written by sooni •Hello. I imported the VCF file and combined FIX and INFO to create a data frame. This data frame contains VCF file information such as …
-
Transform Data into DNA picture
written by anasjamshedI have data in a text file format like this: ![dna][1] [1]: /media/images/451b5d9f-a966-4254-a633-3bfb2c06 I want to make a DNA double helix figure on the basis …
-
AFD plot for each VCF file
written by anasjamshedI have 2 test directories: ![dir][1] and one tsv file that contains information about the population: ![pop][2] [1]: /media/images/453029d7-d7c4-4c3a-8334-e117fd3d [2]: /media/images/00802d58-b802-4145-a81a-82d03c99 I want to write …
-
Volcano plot
written by sarahawan92 •I have made the volcano plot for the significant differentially expressed genes. Up regulated genes are 493 and downregulated genes are 298 having P-Value 0.05 …
-
Volcano plot not centered at origin
written by mm2568 •I am making a volcano plot for my phosphoproteomics data and seemingly the data are not centered around the origin. The reason that I know …
-
Why do I get a big log fold change but small mean change in b value when plotting differential meth…
written by Christine •Hello I am doing differential methylation analysis using limma. I use the m values for testing and b values for plotting. I plotted a volcano …
-
Differential expression analysis with LIMMA results
written by leticia •Hello, I did a differential expression analysis of RNA seq data (normalized RSEM) from TCGA with VOOM and another time with Limma trend , but …
-
why my volcano plot looks strange?
written by hellocita •Hi all, I am dealing with an LC-MS Metabolomics data. I perform log transform, quantile normalization and use linear model to regress out batch. And …
Volcano plots plot -log10(p-value) by logFC, so you couldn't generate one without p-values. However, if you explain your data and questions more we could potentially offer alternatives.
What are the alternatives?
What do you want to show ? Volcanoplot is to visualize differential analysis results, which you did not perform