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0 votes
4 replies
1.6K views
Simulation of gene level methylation data
simulation methylation
written by Mamatha Y S 0
1 vote
2 replies
1.7K views
CytoScape parameters for k-means clustering
cytoscape clustermaker clustering k-means
written by Phenylananin 2
0 votes
2 replies
2.7K views
scRNA-seq downstream analysis on raw vs batch corrected counts
scrna-seq batch-correction
written by codezero 0
0 votes
2 replies
2.4K views
Meta data information about Bacteria. Attempting to get a list (csv file preferably) of the gram-status, morphology etc of all bacterial species.
microbiome r
updated by Ram 4.5K • | written by jacklukemcmurray 0
0 votes
1 reply
789 views
Markduplicated picard
picard
updated by GenoMax 16K • | written by daffodil 1
0 votes
2 replies
3.1K views
Giemsa stain annotation/nomenclature for UCSC cytoband tracks
ucsc ggbio gviz hg19
updated by Ram 4.5K • | written by maden.sean 2
2 votes
5 replies
3.1K views
difference betwween hail and plink
gwas plink hail
written by kkk 2
0 votes
1 reply
883 views
design primers
design primers uniprot
updated by GenoMax 16K • | written by brunofelicianodeomena 0
0 votes
1 reply
775 views
domains
ncbi domains primers
updated by GenoMax 16K • | written by brunofelicianodeomena 0
9 votes
26 replies
23K views
GO analysis: DAVID vs GREAT vs GOrilla
rna-seq chip-seq go gene ontology
updated by ad.am.45.kla.r.is.4 0 • | written by biostart 37
0 votes
0 replies
1.2K views
Seurat Figure legend
single cell
written by synat.keam 12
2 votes
1 reply
5.8K views
Job: Staff Scientists Positions: System Architect And Bioinformatics Engineer, Massachusetts General Hospital, Boston,
sysadmin computational-biologist
updated by ada.m45.k.l.ar.is.4. 0 • | written by U 7
19 votes
15 replies
63K views
Definition of minor and major allele and connection with risk, effect, wildtype and reference allele
risk minor major reference alleles
updated by ad.a.m.4.5.k.l.a.ri.s.4 0 • | written by m98 45
1 vote
6 replies
7.1K views
converting taxID to taxonomy
ncbi taxonomy taxid terminal
updated by a.dam4.5.k.l.ari.s.4 0 • | written by Frieda 6
13 votes
13 replies
9.7K views
How Do You Log Details Of Data Processing/ Pipelines / In Silico Analyses Performed
data galaxy
updated by adam45.kl.a.ri.s.4. 0 • | written by Pi 52
0 votes
1 reply
2.7K views
Minimum reads per sample
multiplexing rna-seq
updated by GenoMax 16K • | written by rico07 0
1 vote
2 replies
1.9K views
Forum: bulk seq vs. sc-seq
scatac-seq atac-seq scrnaseq rnaseq
updated by dsull 781 • | written by SebKittelmann 1
3 votes
6 replies
3.9K views
Forum: Demonstrating Exponential Growth In Pre-School
education
updated by a.d.a.m4.5k.l.a.r.i.s4 0 • | written by Asaf 1.0K
0 votes
1 reply
982 views
SRA ToolKit: can't verify binaries
sra toolkit fastq-dump
updated by GenoMax 16K • | written by Izzy 0
0 votes
1 reply
1.0K views
ClinSV issue
clinsv cnvcalling docker
updated by Charles R. 1 • | written by Jordi 6
0 votes
1 reply
964 views
Design matrix after RUVg correction
limma ruvseq differential-expression
updated by Ram 4.5K • | written by Shaimaa Gamal 1
0 votes
1 reply
731 views
ROC Curve
curve roc python r
written by shabbas12 1
0 votes
4 replies
2.3K views
How to reference input variable in output section of rule of Snakemake rule
python snakemake
updated by Ram 4.5K • | written by Dhatri Badri 0
0 votes
2 replies
1.4K views
Feature.extract(SeqRecord) misses features
biopython
updated by Ram 4.5K • | written by niklas 3
0 votes
2 replies
844 views
different numbers of genes for WGCNA and Differential expression
wgcna edger differential-expression
updated by allingt 4 • | written by Gail 0
0 votes
2 replies
1.2K views
Need a spatial transcriptomics cancer data
ngs scrna-seq single-cell
updated by jv 187 • | written by ahmad mousavi 80
0 votes
2 replies
945 views
Filtering the SNPs
gwas snp gbs
updated by dthorbur 350 • | written by umeshtanwar2 3
2 votes
3 replies
1.5K views
Should you remove PCR duplicates for kmer counting?
kmer dedup duplicates
updated by Darked89 469 • | written by ebaldwin 4
0 votes
0 replies
571 views
News: Online course: Computation Tumor Evolution
r cancer-genomics tumor-evolution genomics
updated by Ram 4.5K • | written by Physalia-courses 281
0 votes
0 replies
574 views
Interpreting HOMER getDifferentialPeaks.pl output columns
atacseq
written by Ronin 1
0 votes
3 replies
1.1K views
BLAST
dna blast sequencing
updated by GenoMax 16K • | written by m90 3
0 votes
2 replies
1.6K views
How to choose --hwe threshold?
plink hardy-weinberg quality-control qc
written by _quantum_girl_ 8
0 votes
3 replies
1.3K views
Why statistic test should I use?
statistics
updated by dariober 1.5K • | written by Matheus 0
1 vote
7 replies
4.3K views
Shrink logFC values after edgeR
logfc edger
updated by Gordon Smyth 916 • | written by arvind.1 1
0 votes
4 replies
1.4K views
Batch effect
single-cell seuratv5 seurat
written by f-bee 0
0 votes
7 replies
2.0K views
1000 Genome: Cause of duplicate variants with different genotypes
crossmap 1000genome 1000g
updated by Giulio Genovese 65 • | written by JourneyToAbyss 25
0 votes
7 replies
3.5K views
cellranger count error
single-cell cellranger
updated by GenoMax 16K • | written by Elinor 0
0 votes
0 replies
586 views
difference in class code between cuffcompare and cuffmerge
cuffmerge lncrna cufflinks cuffcompare
written by ZZOYEA 2
0 votes
2 replies
1.3K views
How to exclude reads from a fastq file, using a list of read names?
fastq grep filter
written by Tash 2
0 votes
1 reply
1.2K views
"N/A" in fgsea result
gsea fgsea
updated by Dave Carlson 223 • | written by puffpumpkin 0
0 votes
0 replies
912 views
How is the "fold change over control" bigwig file generated from ATAC-seq data?
atac-seq encode control
written by Ruoyun 0
0 votes
5 replies
2.2K views
Trouble Understanding DESeq2 Design Formula ("Model Matrix is not Full Rank")
deseq2 biomarkers 16s
written by Rachel 0
1 vote
6 replies
2.8K views
Differential expression analysis with very high duplication rate
rna-seq de picard pcr duplicates
written by JMB 2
0 votes
3 replies
2.0K views
FASTQ-DUMP error while downloading HGDP datadset
hgdp fastqdump
written by Qboy 1
1 vote
4 replies
5.4K views
GFF3 to 12-column BED
gff3 bed
updated by Ram 4.5K • | written by New2R 6
1 vote
10 replies
21K views
conversion of GFF3 formate to BED format
rna-seq
updated by Ram 4.5K • | written by blooming.daisy333 11
1 vote
0 replies
1.4K views
Tool: gxf2bed: A high-performance GTF/GFF-to-BED converter written in Rust
convert gff gtf bed
written by alejandrogzi 16
0 votes
4 replies
1.6K views
Strategies with annotated VCF files to filter very big VCF from WGS
wgs vcf whole-genome-sequencing
updated by barslmn 245 • | written by randyOrlando 2
1 vote
3 replies
2.8K views
GTEx TPMs Vs normalized data
gtex rna-seq normalization gene-expression
updated by jv 187 • | written by DS 1
2 votes
11 replies
6.7K views
Nextflow - I/O and index issues
bwa-mem2 groovy dsl nextflow trim-galore
written by bhumm 20
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