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0 votes
3 replies
18K views
Issues with Merging Seurat Objects: Multiple Counts in Assays Layer
seurat
updated by Felipe • Felipe • written by dxj294 • dxj294
0 votes
1 reply
708 views
Cannot find WGCNA module preservation documentation
preservation wgcna
written by firstdoctor1 • firstdoctor1
0 votes
1 reply
750 views
eQTL analysis of GWAS summary statistics, missing GT values
genomics eqtl gwas
updated by Ram Ram • written by Orlando • Orlando
0 votes
0 replies
722 views
Evaluate if distribution of interest genes (X) against non-interested genes (Y) or empirical theorical distribution
r deg
written by PBC • PBC
0 votes
2 replies
1.0K views
Extract information of mapped reads bam files
mapped bam alignment
updated by Istvan Albert Istvan Albert • written by sata72 • sata72
0 votes
0 replies
552 views
Running ASCAT without matched normal sample
ascat baf cnv
written by Riccardo • Riccardo
0 votes
8 replies
11K views
Notepad and word will not read Fastq or FASTA files
software-error fastq
updated by webmaster • webmaster • written by paul.sillence • paul.sillence
0 votes
5 replies
1.9K views
Consensus sequences producing stop codons when translated
bcftools ensembl gene samtools fasta
updated by Michael Dondrup Michael Dondrup • written by hemr3 • hemr3
0 votes
3 replies
955 views
Multimapped and unique mapped for BAM file of RRBS data
multimapped bam rrbs
updated by ATpoint ATpoint • written by sata72 • sata72
0 votes
2 replies
934 views
Would you recommend me any tool to assign protein family membership to an aminoacidic fasta file?
protein-annotation fasta
updated by Dunois • Dunois • written by v.berriosfarias • v.berriosfarias
1 vote
3 replies
1.3K views
Guidance for connecting a rare phenotype to a genotype in a small family sample
vcf wgs fst
updated by Ankit Ankit • written by tac-a-cat • tac-a-cat
0 votes
3 replies
2.3K views
eggNOG versus Diamond blastp
diamond eggnog protein functional
updated by Dunois • Dunois • written by young_bioinformatician young_bioinformatician
0 votes
7 replies
1.6K views
How to predication/annotation trans-splicing in genome
trans-splicing genome annotation mitochondrial
written by oasiswho • oasiswho
0 votes
3 replies
1.2K views
Snakemake paralellize
snakemake order
updated by Eric Lim Eric Lim • written by Fadwa • Fadwa
0 votes
0 replies
818 views
DEXSeq design formula & estimating dispersion
rna-seq deseq dexseq exon dispersion
written by hofman.bartlomiej • hofman.bartlomiej
0 votes
2 replies
1.0K views
MiRNA data analysis
mirna mirdeep2
updated by Kevin • Kevin • written by Srinka • Srinka
0 votes
3 replies
1.5K views
GO enrichment plot with dotplot strange axis
enrichment go plot
updated by bk11 • bk11 • written by Picasa Picasa
1 vote
3 replies
1.7K views
Difference between mRNA and transcript record types in GFF3 and GTF
gff3
updated by i.sudbery i.sudbery • written by William William
0 votes
2 replies
825 views
bcl2fastq
bcl2fstq
written by daffodil • daffodil
0 votes
3 replies
1.9K views
Submitting NGS data to ArrayExpress via Aspera
ebi aspera arrayexpress
updated by GenoMax GenoMax • written by Meisam • Meisam
0 votes
1 reply
814 views
coding sequence
biology sequence molecular coding gene
updated by Pierre Lindenbaum Pierre Lindenbaum • written by Sijjil • Sijjil
0 votes
6 replies
2.1K views
Docker for Bioconductor Packages
docker bioconductor
updated by colindaven colindaven • written by S • S
1 vote
1 reply
1.4K views
WisecondorX (NIPT) np.array( ValueError)?
numpy ngs wisecondorx nipt
updated by GenoMax GenoMax • written by Clark_BioMorgan • Clark_BioMorgan
0 votes
2 replies
1.7K views
How to manage GO terms for metagenomics
metagenome gene-ontology go
updated by geneontologyhelp • geneontologyhelp • written by young_bioinformatician young_bioinformatician
2 votes
7 replies
4.8K views
Why is local BLAST so slow? (yet another one of these questions)
blast ncbi sequence
written by mykle hoban • mykle hoban
0 votes
29 replies
7.3K views
Gene labels problem in enhanced volcano
r ggplot2 enhancedvolcano
updated by Mensur Dlakic Mensur Dlakic • written by anasjamshed anasjamshed
0 votes
19 replies
3.5K views
Matching transcriptomic data to clinical data
r
updated by Ram Ram • written by Azra • Azra
0 votes
2 replies
1.2K views
Setting up our own server for Genomic Analysis
server hardware sequencing
updated by GenoMax GenoMax • written by Maverick • Maverick
0 votes
4 replies
961 views
Cell Cycle Labeled Fastq files
cell-cycle scrna-seq
updated by ATpoint ATpoint • written by halimaakhter014 • halimaakhter014
0 votes
0 replies
677 views
Need bedGraph File from VarScan2 Output
bedgraph deeptools varscan2 bigwig bed
updated by Ram Ram • written by Jacob • Jacob
0 votes
0 replies
773 views
HiC Explorer TAD calling - post processing
tad hic-explorer
updated by Ram Ram • written by nach.mcnach • nach.mcnach
2 votes
3 replies
1.4K views
Inject haplotypes into rGFA?
pangenome
updated by Panos Panos • written by agd27 • agd27
0 votes
4 replies
1.2K views
Absolute logfc and Pvalue for statistical calculation
volcano-plot logfc
updated by Ram Ram • written by anasjamshed anasjamshed
0 votes
3 replies
1.4K views
DESeq2 - Struggling to Define Desired Contrast
rna-seq deseq2
updated by Ram Ram • written by robert.flynn.21 • robert.flynn.21
0 votes
2 replies
917 views
Is it possible to identify the strand of an RNA using UMI?
high-throughput umi srna qiagen rna-seq
updated by i.sudbery i.sudbery • written by Carolina • Carolina
0 votes
3 replies
3.1K views
Find all locations of aligned reads with MQ (Mapping Quality) = 0.
align igv bam
updated by clealk • clealk • written by captainlabman • captainlabman
0 votes
5 replies
1.3K views
line 1: syntax error near unexpected token `Rsubread
featurecounts rna-seq linux
updated by Ram Ram • written by sehriban.buyukkilic • sehriban.buyukkilic
0 votes
2 replies
888 views
Correlation Analysis of a particular gene and the DE expressed genes between two conditions
r correlation rna-seq
written by dzisis1986 • dzisis1986
4 votes
0 replies
1.0K views
Tool: GW: fast genome browser and variant exploration tool
visualization genome-browser genome variant-annotation genomics
written by clealk • clealk
0 votes
6 replies
2.3K views
How can I find the corresponding protein's name of one gene?
protein-encoding gene protein
updated by Wayne Wayne • written by Tianyu • Tianyu
0 votes
0 replies
581 views
results of topGO
topgo go-term go-id gene2go
updated by Ram Ram • written by azadeh.taati • azadeh.taati
0 votes
1 reply
1.8K views
SPAdes error: finished abnormally, OS return value: 28
spades
updated by biofalconch biofalconch • written by jiyoung • jiyoung
0 votes
4 replies
1.7K views
Molecular docking with Autodock
docking proteomics
updated by Ram Ram • written by shwetamgr1 • shwetamgr1
0 votes
1 reply
844 views
Conda appears different than yesterday
linux conda
updated by shenwei356 shenwei356 • written by davy.cyl • davy.cyl
6 votes
0 replies
1.8K views
Tutorial: 12 useful command line tools and tricks for genomics data science
unix
updated by zx8754 zx8754 • written by Ming Tommy Tang Ming Tommy Tang
0 votes
1 reply
1.1K views
Optimal network construction strategy to investigate interactions between proteins and metabolites in more than one disease
networks metabolomics proteomics cytoscape
updated by Scooter Scooter • written by Giovana • Giovana
0 votes
8 replies
2.4K views
RNA seq for non-model species
non-model-species rna-seq
updated by dr_cfoster dr_cfoster • written by weather • weather
1 vote
9 replies
3.3K views
Accessing SRA file with multiple fastqs under one accession
sratoolkit fastq sra
updated by GenoMax GenoMax • written by tony_88888 • tony_88888
0 votes
2 replies
1.1K views
Deleting cells from seurat object
seurat
written by odi • odi
0 votes
1 reply
805 views
Computing mid parent value for DE analysis
edger limma deseq2
updated by Gordon Smyth Gordon Smyth • written by pl23 • pl23
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