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0 votes
1 reply
1.2K views
Trouble making a ggmsa alignment plot
r ggmsa
updated by GenoMax 16K • | written by andre.arrudalima 8
0 votes
8 replies
2.3K views
Adapter Removing
fastqc
updated by a.alnawfal.1992 38 • | written by daffodil 1
0 votes
5 replies
1.5K views
DEPTH IN GBS
samtools
updated by cmdcolin 448 • | written by Michelle Guerra 0
0 votes
3 replies
1.4K views
BioPython phylo: collapsing nodes on tree if node in list and rename the respective collapsed node
phylogeny biopython
updated by Ram 4.5K • | written by Naomi Sun 1
0 votes
2 replies
1.2K views
cover depth estimation with samtools depth and mpileup
samtools mpileup depth
updated by Huiyang 20 • | written by Ирина 0
0 votes
0 replies
540 views
How to design and formulate a pathway to computationally study genes associated with certain linked phenotypes?
genomics evolutionary-biology
updated by Ram 4.5K • | written by amit99.success 0
0 votes
3 replies
1.4K views
Splitting scRNA seq data from Multiome data(scRNA+ scATAC)
scrna-seq signac
updated by Ram 4.5K • | written by gradstudent 0
0 votes
4 replies
2.9K views
Get original format information from SRA metadata
sra sradb metadata pysradb sqlite3
updated by predeus 212 • | written by mariafirulevabio 4
0 votes
2 replies
1.2K views
Problem with survival analysis with gene symbols containing hyphen
r survival-analysis
written by nazaninhoseinkhan 53
0 votes
3 replies
1.7K views
Normalization of combined normal and tumor tissue samples from GTEx and TCGA prior to CIBERSORTx devconvolution
gtex cibersort tcga rna normalization
updated by jv 187 • | written by star 1
0 votes
0 replies
507 views
hierarchical clustering : color the branches of the dendrogram based on the sample types
r hierarchical-clustering
written by sanaz 0
0 votes
1 reply
1.2K views
How to identify hub genes in Cytoscape from a WGCNA output?
wgcna cytoscape
updated by Ram 4.5K • | written by pavelasquezv 5
0 votes
1 reply
1.1K views
Adonis2 inR
ggplot2 adonis
updated by Ram 4.5K • | written by rene.j.erhardt 3
0 votes
1 reply
967 views
Clumpify then Salmon?
salmon rna-seq clumpify
updated by Ram 4.5K • | written by JMB 2
0 votes
3 replies
2.0K views
Get mRNA sequence from amino acid sequence using BioPython
protein biopython fasta
updated by Ram 4.5K • | written by brunofelicianodeomena 0
0 votes
2 replies
1.5K views
TPM or RPKM for Metagenomic Contig Abundance
rpkm metagenomics tpm rna-seq
updated by SergFly 5 • | written by joshua.kirsch 0
0 votes
2 replies
1.4K views
Attempting to Use circlator running into issues with CANU
canu circlator
written by dlera.lozano 1
0 votes
0 replies
1.8K views
Job: Job Vacancy Announcement - Health Scientist Administrator (Program Officer) - Genomics Research Branch (GRB)(Branch Chief: Jonathan Pevsner)
genetics program-officer genomics
updated by Ram 4.5K • | written by NIMH Search 0
0 votes
0 replies
707 views
Sequence alignment similarity score including weakly conserved groups
alignment protein sequence
updated by Ram 4.5K • | written by Hansen_869 8
0 votes
5 replies
2.4K views
PCA from plink2 for SGDP using a pangenome and DeepVariant
umap deepvariant pangenome plink2 pca
updated by DBScan 53 • | written by Matteo Ungaro 16
0 votes
1 reply
872 views
Which FLASH parameters to use?
paired-end flash single-end merged
updated by GenoMax 16K • | written by Elisa 0
0 votes
5 replies
2.1K views
Sequence alignment matrix
alignment protein sequence
updated by Mensur Dlakic 3.0K • | written by Hansen_869 8
1 vote
5 replies
2.1K views
Illumina NextSeq 500 Read Length
ngs read nextseq
updated by jv 187 • | written by Bushra Bibi 8
0 votes
2 replies
1.7K views
UMI workflow resulting in bams with empty reads
umi
written by ww22runner 6
0 votes
8 replies
2.7K views
Moderate Mapping percentage
trimmomatic ngs rna-seq
written by Researcher 3
0 votes
1 reply
741 views
cripsr type and bacterial taxonomic
metagenomics
updated by dthorbur 350 • | written by Petchimuthu 0
0 votes
0 replies
503 views
Testing ghost species using f3 statistics
admixtools f3
updated by Ram 4.5K • | written by ki-woong.nam 0
0 votes
4 replies
3.2K views
Different relatedness estimates by PLINK and VCFTOOLS despite same method
kinship vcftools plink relatedness
written by 8armed 2
0 votes
6 replies
3.2K views
Geo2R troubleshooting
geo2r
written by Sanjukta 0
0 votes
0 replies
558 views
WGCNA | plotDendroAndColors ERROR
wgcna plotdendroandcolors
written by Priya 0
0 votes
1 reply
718 views
CellPlex CMO highbackground
scrna-seq cellplex cmo
updated by bk11 312 • | written by TheCatalyst 0
0 votes
7 replies
1.9K views
Maker: Combining Annotations for Large Genomes
maker genome annotation
written by Kinoppy 0
0 votes
1 reply
980 views
Job: How to calculate hub genes in Cytoscape from a WGCNA output?
cytoscape wgcna network-analysis
updated by Ram 4.5K • | written by pavelasquezv 5
0 votes
1 reply
2.1K views
snippy error
snippy
updated by dr_cfoster 125 • | written by blur 30
0 votes
2 replies
939 views
Protein model refinement
protein refinement
written by Curious 1
0 votes
3 replies
1.3K views
How should I analyze differences between phyletic patterns?
phylogeny thermophiles proteoms phyletic-patterns
updated by GenoMax 16K • | written by Igor 0
0 votes
7 replies
2.0K views
wANNOVAR memory error
vcf annovar
updated by vinayjrao 26 • | written by colourful_frog 0
0 votes
9 replies
23K views
HISAT2 software installation
rna-seq
updated by GenoMax 16K • | written by saj98 14
0 votes
7 replies
2.3K views
adjusting parameters in ViolinPlot did not work
single-cell
updated by Ram 4.5K • | written by synat.keam 12
0 votes
5 replies
1.9K views
Extract bfile from .bgen using a given .bim to handle duplicated snps
bim plink bgen
updated by chrchang523 1.1K • | written by yang1641 0
0 votes
7 replies
4.3K views
make a heat map with python
heatmap python
updated by Wayne 208 • | written by brunofelicianodeomena 0
0 votes
1 reply
708 views
Retrieving gene expression from tabula muris in R
muris tabula
updated by jv 187 • | written by adri.vife 0
1 vote
2 replies
1.3K views
TCR target prediction
tcr genomics sequencing seurat 10x repertoire scrna
updated by Ram 4.5K • | written by Ahmed 1
1 vote
2 replies
1.6K views
How to continue TCR-seq downstream analysis by seurat?
cellranger vdj tcr-seq seurat
updated by tim 0 • | written by Lianfu 1
1 vote
5 replies
5.5K views
Any tools for predicting binding affinity between TCR and epitode?
prediction tcr cancer
updated by tim 0 • | written by CY 77
0 votes
0 replies
1.3K views
ANCOM-BC2 (microbiome differential analysis) questions
differential-analysis
updated by Ram 4.5K • | written by Ruben 0
1 vote
1 reply
1.8K views
TCR sequence to its targets
tcr-identity
updated by Ram 4.5K • | written by colonppg 12
0 votes
7 replies
2.1K views
scRNA-seq analysis
scrna-seq
updated by jared.andrews07 1.9K • | written by kayah 2
0 votes
1 reply
776 views
FastaAlternateReferenceMaker merges overlapping regions
fastaalternatereferencemaker
updated by Ram 4.5K • | written by ManuelDB 11
0 votes
5 replies
2.2K views
merging VCF files using bcftools - everyone becomes related
vcf plink bcftools
written by MaYo 0
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