This is a test version of Biostars. For the public version, visit https://www.biostars.org.
0 votes
3 replies
1.2K views
Biologic Images processing: Immunofluorescences
microscope image immunofluorescence developmental processing
updated by hq.huang11.6 • hq.huang11.6 • written by Francesco • Francesco
0 votes
1 reply
926 views
Extracting observations from one dataframe to populate another
r tibble stringr dplyr tidyr
updated by Ram Ram • written by Rachel • Rachel
0 votes
5 replies
2.2K views
Mapping vs Alignment mode in Salmon
salmon alignment mapping rna-seq
written by Sowmya • Sowmya
0 votes
3 replies
1.7K views
How to exclude sex-dependent genes from RNA-Seq?
rna-seq deseq2
updated by ATpoint ATpoint • written by bxxxmxxxx • bxxxmxxxx
0 votes
1 reply
873 views
fold change value
proteomics gene-expression
updated by Ram Ram • written by Giovana • Giovana
0 votes
9 replies
2.6K views
Tool: Generate unit-tested, ready-to-run pipelines using natural language prompting
ngs pipeline genomics cloud ai
written by Kevin • Kevin
0 votes
12 replies
4.0K views
Integrated genes from bulk RNA seq and ATAC seq
atac-seq bulk-rna
updated by Ram Ram • written by Chris • Chris
0 votes
4 replies
1.7K views
How to find SNP locations in assemblies other than hg38
hg19 snp dbsnp
updated by Ram Ram • written by Bosberg • Bosberg
0 votes
11 replies
2.7K views
Remove X in row name with only number
gsva
updated by Ram Ram • written by Chris • Chris
0 votes
5 replies
1.5K views
HPRC sample information (human Pangenome)
ont pangenome nanopore hprc
updated by GenoMax GenoMax • written by turcoa1 • turcoa1
0 votes
2 replies
1.4K views
PyMol vs DS visualizer for publication images
dsvisualizer pymol
updated by Wayne Wayne • written by Stroodes • Stroodes
0 votes
1 reply
631 views
single cell annotation of human data using mouse data
single-cell singler seurat
updated by Ram Ram • written by shersky • shersky
1 vote
2 replies
1.1K views
Tumour purity and ploidy estimation
copy-number whole-exome-sequencing
written by bp22 • bp22
1 vote
4 replies
1.6K views
What can cause broken read-pairs (chimeric read-pairs) in a sequencing run?
qc
written by William William
0 votes
0 replies
634 views
Interpret mean variance trend plot
r voom
written by anasjamshed anasjamshed
0 votes
0 replies
661 views
GSEA or PEA with pearson correlations instead of log2foldchanges
gsea enrichment-analysis pea cellrank
updated by Ram Ram • written by Tolga • Tolga
0 votes
4 replies
1.5K views
average of one column for each category of another column
r
updated by Ram Ram • written by sata72 • sata72
2 votes
3 replies
4.9K views
is oxford nanopore technology data paired or single end sequencing?
oxford-nanopore dna rna
updated by Ram Ram • written by Alewa Alewa
0 votes
1 reply
1.2K views
RNA-Seq expression analysis
rna-seq nextflow heatmap gene-expression
updated by dthorbur dthorbur • written by Ric Ric
0 votes
1 reply
2.0K views
News: FINAL CALL: RNA-Seq Data Analysis Workshop (March 11 - 14, 2024 in Berlin, Germany)
ngs rna-seq workshop
written by David Langenberger David Langenberger
0 votes
1 reply
963 views
Network Analysis of Microbiome Data: MicrobiomeAnalyst vs. Cytoscape
microbiomeanalyst
written by ohtang7 • ohtang7
0 votes
1 reply
691 views
Sequence alignment
basecall
updated by Mensur Dlakic Mensur Dlakic • written by Emmanuel • Emmanuel
3 votes
4 replies
3.1K views
Why employ normalization methods, and how can they be utilized in DEG analysis?
r degs normalization
written by wyt1995 • wyt1995
0 votes
0 replies
550 views
IC50 values for enumerated SMILES
machine_learning ic50 smiles_enumeration data_augmentation
written by Sneha • Sneha
0 votes
1 reply
1.2K views
Samtools not installing properly on mac
umitools samtools ngs
updated by ATpoint ATpoint • written by Sarah • Sarah
0 votes
0 replies
1.6K views
Job: Computational biologist / Bioinformatician (m/f/d) / (PhD), University of Oldenburg, Germany
medical-genetics research-position phd
updated by Ram Ram • written by AHP • AHP
0 votes
2 replies
1.1K views
Metagenomics analysis
sedidna galaxy ceramics metagenomics
updated by Mensur Dlakic Mensur Dlakic • written by Ayda Ecem • Ayda Ecem
0 votes
0 replies
668 views
News: Online course : Meta-Analysis in R
r meta-analysis statistics
updated by Ram Ram • written by Physalia-courses Physalia-courses
1 vote
5 replies
2.8K views
Physical Protein size
proteomics databases
updated by Michael Dondrup Michael Dondrup • written by Gabriel Gabriel
0 votes
2 replies
1.0K views
Protein modeling
protein-modeling alphafold2
updated by GenoMax GenoMax • written by Curious • Curious
0 votes
3 replies
1.3K views
Differential gene expression design using Deseq2
rna-seq
updated by swbarnes2 swbarnes2 • written by drajangirija • drajangirija
0 votes
1 reply
716 views
selscan --xpehh
selscan
updated by Ram Ram • written by sevda • sevda
0 votes
6 replies
1.8K views
A lot of unknown/weird gene names after alignment with cellranger or starsolo
cellranger
written by Tolga • Tolga
0 votes
8 replies
2.1K views
Can somebody guide me to setting up FAN-C module for hic analysis in my ubuntu ?
fanc hi-c hic fan-c
written by naveedhasan2000 • naveedhasan2000
0 votes
5 replies
3.1K views
How to collapse leaves with the same name in ETE3 tree?
python ete3
updated by Yogesh • Yogesh • written by Andrzej Zielezinski Andrzej Zielezinski
0 votes
5 replies
1.8K views
Generate BED file
bed
written by daffodil • daffodil
0 votes
1 reply
1.7K views
How to normalise Bulk RNA-seq data to account for transcript length, coverage depth, library size and batch effects?
rna-seq normalisation
updated by ATpoint ATpoint • written by DJHS • DJHS
0 votes
2 replies
2.1K views
EdgeR: upregulated with respect to what group?
upregulated edger
updated by Gordon Smyth Gordon Smyth • written by bioinfo2345 • bioinfo2345
0 votes
1 reply
1.5K views
Correct biomart version for TCGA data
tcga sarek biomart
updated by Maxime Garcia Maxime Garcia • written by ramiro.barrantes • ramiro.barrantes
0 votes
2 replies
943 views
Decision of Random Effect and Random Slope in rare cases
lmm model
written by manjumoorthy95 • manjumoorthy95
0 votes
7 replies
2.5K views
Is there a program to average read counts from technical replicates?
rna-seq edger
updated by Gordon Smyth Gordon Smyth • written by Tota • Tota
0 votes
5 replies
1.8K views
How do I work out which condition the genes are down-regulated in?
edger rna-seq glm
updated by Gordon Smyth Gordon Smyth • written by Tota • Tota
0 votes
2 replies
841 views
Can Novor.cloud be used for DIA analysis?
novor dia archaeology ancient-protein
written by xq241 • xq241
0 votes
1 reply
2.4K views
positive and negative Fold Change glmLRT test
rna-seq log2fc glmlrt differential-expression
updated by Ram Ram • written by debitboro debitboro
0 votes
2 replies
921 views
Question regarding transcript quantification with hybrid seq
short-read salmon long-read hybrid-seq
updated by jared.andrews07 jared.andrews07 • written by shinyjj • shinyjj
1 vote
1 reply
1.6K views
logFoldChange computed by EdgeR different from naive log2FCcomputed based on reads
edger fold-change
updated by Gordon Smyth Gordon Smyth • written by ZheFrench ZheFrench
0 votes
0 replies
555 views
PAML error
paml
written by Pit • Pit
0 votes
0 replies
586 views
Calculate mean DP4 in a multisample vcf
dp4 vcf bcftools
updated by Ram Ram • written by avelarbio46 • avelarbio46
0 votes
2 replies
1.0K views
Gene database
genomic databases
updated by Ram Ram • written by Curious • Curious
0 votes
1 reply
741 views
What does it mean when genes has same Hugo ID in different species?
orthologs hugoname geneid
updated by GenoMax GenoMax • written by ToTheMoon • ToTheMoon
Recent Votes
Recent Locations
Recent Replies