This is a test version of Biostars. For the public version, visit https://www.biostars.org.
0 votes
4 replies
2.3K views
Obtain a --gene-trans-map file after rnaSPAdes
rnaspades trinity
updated by weidonglu 0 • | written by UserA 0
0 votes
1 reply
720 views
How can I determine the p-value of genes within each identified module in WGCNA?
wgcna exportnetworktocytoscape
updated by allingt 4 • | written by hiamour 0
0 votes
3 replies
1.7K views
Need suggestions for ROC Curve in R
curve roc python r
updated by bk11 312 • | written by shabbas12 1
0 votes
5 replies
2.6K views
Jellyfish & Paired end reads
jellyfish genome-assembly kmer
updated by Darked89 469 • | written by joshua.j.wright 1
0 votes
0 replies
1.1K views
Job: PhD fellowship in bioinformatic analysis of host - pathogen interactions in the context of anti-microbial resistance in pigs
non-coding-rna
updated by Ram 4.5K • | written by info 9
0 votes
0 replies
625 views
Conservation score using phastCons
ucsc phastcons conservation multiz100way
written by didemdkn 0
1 vote
2 replies
3.0K views
Guided genome assembly
genome pacbio reads assembly
updated by dthorbur 350 • | written by san96 19
0 votes
1 reply
818 views
#Bismark Methylation mapping Error
bismark0.24 multicore methylation
updated by GenoMax 16K • | written by Nai 5
0 votes
3 replies
1.9K views
Pacbio Longread Depth of coverage
longread pacbio coverage
updated by Bas 0 • | written by hellbio 52
0 votes
2 replies
1.2K views
How to convert Mummer coords output to a Bed file?
nucmer mummer bed
updated by Ram 4.5K • | written by Biologist 29
0 votes
0 replies
894 views
Job: Project Scientist in Molecular Biology at UC San Diego
ucsd biology lifescience highereducation
written by UCSDBioSci 3
0 votes
1 reply
1.4K views
Amphora2: Illegal division by zero at Phylotyping.pl line 132
phylotyping amphora2 phylogenetic
updated by Ram 4.5K • | written by sanzeev.dahal 0
0 votes
1 reply
705 views
X chromosome inactivation
x-inactivation
updated by bk11 312 • | written by deneusmozart 0
0 votes
0 replies
553 views
How to present the metabolic pathway / gene differences between two metagenome samples?
visualization metagenomics
written by jway 0
1 vote
3 replies
1.5K views
Job: Looking for bioinformatics help
genomics
updated by Ram 4.5K • | written by aj123 14
1 vote
3 replies
1.9K views
Expedite alphafold2 or RoseTTAFold for bulk jobs
alphafold protein-structure
updated by Ram 4.5K • | written by btski 1
2 votes
4 replies
2.8K views
Is there any free online tool where I can do online docking studies of 1000 ligands with a single protein in a single step .
docking
updated by keaun 4 • | written by Manoj 20
0 votes
4 replies
1.8K views
PRSice and R lm() show different association analysis output (coefficient, SE and P)
prs prsice2 ukbb
updated by Sam 484 • | written by Salahuddin 0
0 votes
2 replies
1.3K views
vcf-validator could not parse the alleles
vcf-validator vcftools vcf
written by ekirsch 0
0 votes
0 replies
706 views
10X cellranger-atac generated bed files for DifBind
diffbind 10x bed cellranger-atac
updated by Ram 4.5K • | written by iliyal 0
0 votes
3 replies
1.5K views
Coordinates of CDS sequence
cds genbank fasta
updated by Mensur Dlakic 3.0K • | written by hemr3 1
0 votes
1 reply
871 views
RNA-Seq | DESeq2 | differentially expressed genes | Dispersion
degs dispersion deseq2
updated by BioinfGuru 214 • | written by Dominic 0
0 votes
2 replies
1.6K views
Significance of P value in GSEA
gsea p-value
updated by jv 187 • | written by Pumla 0
0 votes
7 replies
2.6K views
How to subsample from multiple fastq files using seqtk command
seqtk
updated by Ram 4.5K • | written by neha.jnu463 0
0 votes
2 replies
1.4K views
bcftools merging 3540 individual files
bcftools
written by realtreeecat 0
1 vote
0 replies
1.1K views
Job: Postdoctoral researcher in computational (epi)genomics (Maastricht, The Netherlands)
long-read-sequencing postdoc homo-sapiens repetitive-elements epigenetics
updated by Ram 4.5K • | written by Athina Vidaki 4
2 votes
0 replies
1.1K views
Herald: The Biostar Herald for Monday, February 12, 2024
herald
written by Biostar 380
0 votes
1 reply
2.5K views
How to get raw mRNA count from Seurat converted anndata
anndata seurat
updated by jv 187 • | written by gradstudent 0
0 votes
0 replies
648 views
Seeking Guidance on Standardization Methods for eQTL Analyses with Diverse Preprocessing Techniques
gwas eqtl gene-expression
updated by Ram 4.5K • | written by DS 1
1 vote
5 replies
2.8K views
cellranger error message
multiplexing cellranger
updated by Julian 0 • | written by Alivia 1
0 votes
0 replies
530 views
miRNAs biogenesis tools
mirnas biogenesis
written by karlaarz 12
0 votes
1 reply
862 views
IntronicParts vs. intronsByTranscript
genomicfeatures genomicranges
updated by PK 13 • | written by kethselly 0
0 votes
1 reply
1.2K views
Exon often targeted by mobile element insertions?
epigenetics biology
updated by benformatics 426 • | written by German.M.Demidov 299
0 votes
0 replies
546 views
bulk RNA-seq data for triple negative breast cancer cell lines
tnbc breastcancer rnaseq celllines
written by bstrs 0
0 votes
0 replies
941 views
News: NGS Data Analysis Courses for Absolute Beginners
ngs dnaseq rnaseq singlecellsequencing dataanalysis
written by David Langenberger 1.1K
1 vote
2 replies
1.4K views
Transcript feature coverage with coverage of each feature shown like e.g. UTR's CDS, exons etc
rseqc
updated by Huiyang 20 • | written by Saad Khan 44
0 votes
4 replies
1.8K views
Should I exclude unmapped reads and proceed with the analysis for low mapped samples, or omit them altogether?
star mapping rnaseq
updated by dthorbur 350 • | written by Sib 8
0 votes
1 reply
2.4K views
Calling variants with UMI-collapsed duplex consensus reads
mutect2 callduplexconsensusreads fgbio umi
updated by Ram 4.5K • | written by blid11 0
1 vote
2 replies
16K views
JoinLayers to find markers in merged or integrated analysis in seurat
scrna-seq seurat findmarkers
written by mohammedtoufiq91 27
0 votes
11 replies
2.5K views
mtDNA Cyclic Sequence Alignment CSAtool
mtdna alignment csa
updated by GenoMax 16K • | written by marco.barr 22
0 votes
5 replies
1.8K views
Multiple sequence alignment images
msa r ggmsa jalview
written by alslonik 32
1 vote
1 reply
1.5K views
What does PCA really tells about Biological data?
techniques reduction dimension pca
updated by Philipp Bayer 888 • | written by WUSCHEL 94
4 votes
12 replies
19K views
ERROR: failed to find the gene identifier attribute in the 9th column of the provided GTF file.
featurecounts
updated by BioinfGuru 214 • | written by chatterjee.arumoy 6
0 votes
0 replies
454 views
eCLIP barcode extraction
eclip barcodes randomer
written by Pac314 1
0 votes
14 replies
3.4K views
Bowtie alignment
bowtie2 singletons
written by daffodil 1
0 votes
7 replies
3.2K views
How do I use md5sum to check if my .fastq files from SRA Explorer have been downloaded correctly
scrna-seq md5
updated by ATpoint 9.1K • | written by biotrekker 11
0 votes
6 replies
1.8K views
Degenerate primers
trimming
updated by Ram 4.5K • | written by M1985 0
0 votes
1 reply
1.3K views
Distance index computation during `vg --autoindex` takes too long with one GFA file but not with the other.
vg giraffe
updated by Jordan M Eizenga 78 • | written by Harsh 0
0 votes
0 replies
639 views
Scores in multimir R package
r mirna mirdb multimir targetscan
written by Serij´s 0
0 votes
0 replies
645 views
News: Online course: Genome Assembly and Annotation
annotation genome-assembly nanopore pacbio
updated by Ram 4.5K • | written by Physalia-courses 281
Recent Votes
Recent Locations
Recent Replies