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0 votes
1 reply
735 views
cripsr type and bacterial taxonomic
metagenomics
updated by dthorbur dthorbur • written by Petchimuthu • Petchimuthu
0 votes
0 replies
502 views
Testing ghost species using f3 statistics
admixtools f3
updated by Ram Ram • written by ki-woong.nam • ki-woong.nam
0 votes
4 replies
3.2K views
Different relatedness estimates by PLINK and VCFTOOLS despite same method
kinship vcftools plink relatedness
written by 8armed • 8armed
0 votes
6 replies
3.1K views
Geo2R troubleshooting
geo2r
written by Sanjukta • Sanjukta
0 votes
0 replies
549 views
WGCNA | plotDendroAndColors ERROR
wgcna plotdendroandcolors
written by Priya • Priya
0 votes
1 reply
710 views
CellPlex CMO highbackground
scrna-seq cellplex cmo
updated by bk11 • bk11 • written by TheCatalyst • TheCatalyst
0 votes
7 replies
1.9K views
Maker: Combining Annotations for Large Genomes
maker genome annotation
written by Kinoppy • Kinoppy
0 votes
1 reply
975 views
Job: How to calculate hub genes in Cytoscape from a WGCNA output?
cytoscape wgcna network-analysis
updated by Ram Ram • written by pavelasquezv • pavelasquezv
0 votes
1 reply
2.1K views
snippy error
snippy
updated by dr_cfoster dr_cfoster • written by blur blur
0 votes
2 replies
933 views
Protein model refinement
protein refinement
written by Curious • Curious
0 votes
3 replies
1.3K views
How should I analyze differences between phyletic patterns?
phylogeny thermophiles proteoms phyletic-patterns
updated by GenoMax GenoMax • written by Igor • Igor
0 votes
7 replies
2.0K views
wANNOVAR memory error
vcf annovar
updated by vinayjrao vinayjrao • written by colourful_frog • colourful_frog
0 votes
9 replies
23K views
HISAT2 software installation
rna-seq
updated by GenoMax GenoMax • written by saj98 saj98
0 votes
7 replies
2.2K views
adjusting parameters in ViolinPlot did not work
single-cell
updated by Ram Ram • written by synat.keam • synat.keam
0 votes
5 replies
1.9K views
Extract bfile from .bgen using a given .bim to handle duplicated snps
bim plink bgen
updated by chrchang523 chrchang523 • written by yang1641 • yang1641
0 votes
7 replies
4.2K views
make a heat map with python
heatmap python
updated by Wayne Wayne • written by brunofelicianodeomena • brunofelicianodeomena
0 votes
1 reply
701 views
Retrieving gene expression from tabula muris in R
muris tabula
updated by jv jv • written by adri.vife • adri.vife
1 vote
2 replies
1.2K views
TCR target prediction
tcr genomics sequencing seurat 10x repertoire scrna
updated by Ram Ram • written by Ahmed • Ahmed
1 vote
2 replies
1.6K views
How to continue TCR-seq downstream analysis by seurat?
cellranger vdj tcr-seq seurat
updated by tim • tim • written by Lianfu • Lianfu
1 vote
5 replies
5.5K views
Any tools for predicting binding affinity between TCR and epitode?
prediction tcr cancer
updated by tim • tim • written by CY CY
0 votes
0 replies
1.3K views
ANCOM-BC2 (microbiome differential analysis) questions
differential-analysis
updated by Ram Ram • written by Ruben • Ruben
1 vote
1 reply
1.8K views
TCR sequence to its targets
tcr-identity
updated by Ram Ram • written by colonppg colonppg
0 votes
7 replies
2.1K views
scRNA-seq analysis
scrna-seq
updated by jared.andrews07 jared.andrews07 • written by kayah • kayah
0 votes
1 reply
760 views
FastaAlternateReferenceMaker merges overlapping regions
fastaalternatereferencemaker
updated by Ram Ram • written by ManuelDB ManuelDB
0 votes
5 replies
2.1K views
merging VCF files using bcftools - everyone becomes related
vcf plink bcftools
written by MaYo • MaYo
0 votes
4 replies
1.6K views
Simulation of gene level methylation data
simulation methylation
written by Mamatha Y S • Mamatha Y S
1 vote
2 replies
1.6K views
CytoScape parameters for k-means clustering
cytoscape clustermaker clustering k-means
written by Phenylananin • Phenylananin
0 votes
2 replies
2.6K views
scRNA-seq downstream analysis on raw vs batch corrected counts
scrna-seq batch-correction
written by codezero • codezero
0 votes
2 replies
2.4K views
Meta data information about Bacteria. Attempting to get a list (csv file preferably) of the gram-status, morphology etc of all bacterial species.
microbiome r
updated by Ram Ram • written by jacklukemcmurray • jacklukemcmurray
0 votes
1 reply
783 views
Markduplicated picard
picard
updated by GenoMax GenoMax • written by daffodil • daffodil
0 votes
2 replies
3.1K views
Giemsa stain annotation/nomenclature for UCSC cytoband tracks
ucsc ggbio gviz hg19
updated by Ram Ram • written by maden.sean • maden.sean
2 votes
5 replies
3.1K views
difference betwween hail and plink
gwas plink hail
written by kkk • kkk
0 votes
1 reply
869 views
design primers
design primers uniprot
updated by GenoMax GenoMax • written by brunofelicianodeomena • brunofelicianodeomena
0 votes
1 reply
757 views
domains
ncbi domains primers
updated by GenoMax GenoMax • written by brunofelicianodeomena • brunofelicianodeomena
9 votes
26 replies
23K views
GO analysis: DAVID vs GREAT vs GOrilla
rna-seq chip-seq go gene ontology
updated by ad.am.45.kla.r.is.4 • ad.am.45.kla.r.is.4 • written by biostart biostart
0 votes
0 replies
1.2K views
Seurat Figure legend
single cell
written by synat.keam • synat.keam
2 votes
1 reply
5.8K views
Job: Staff Scientists Positions: System Architect And Bioinformatics Engineer, Massachusetts General Hospital, Boston,
sysadmin computational-biologist
updated by ada.m45.k.l.ar.is.4. • ada.m45.k.l.ar.is.4. • written by U U
19 votes
15 replies
63K views
Definition of minor and major allele and connection with risk, effect, wildtype and reference allele
risk minor major reference alleles
updated by ad.a.m.4.5.k.l.a.ri.s.4 • ad.a.m.4.5.k.l.a.ri.s.4 • written by m98 m98
1 vote
6 replies
7.1K views
converting taxID to taxonomy
ncbi taxonomy taxid terminal
updated by a.dam4.5.k.l.ari.s.4 • a.dam4.5.k.l.ari.s.4 • written by Frieda • Frieda
13 votes
13 replies
9.7K views
How Do You Log Details Of Data Processing/ Pipelines / In Silico Analyses Performed
data galaxy
updated by adam45.kl.a.ri.s.4. • adam45.kl.a.ri.s.4. • written by Pi • Pi
0 votes
1 reply
2.7K views
Minimum reads per sample
multiplexing rna-seq
updated by GenoMax GenoMax • written by rico07 • rico07
1 vote
2 replies
1.9K views
Forum: bulk seq vs. sc-seq
scatac-seq atac-seq scrnaseq rnaseq
updated by dsull dsull • written by SebKittelmann • SebKittelmann
3 votes
6 replies
3.9K views
Forum: Demonstrating Exponential Growth In Pre-School
education
updated by a.d.a.m4.5k.l.a.r.i.s4 • a.d.a.m4.5k.l.a.r.i.s4 • written by Asaf Asaf
0 votes
1 reply
961 views
SRA ToolKit: can't verify binaries
sra toolkit fastq-dump
updated by GenoMax GenoMax • written by Izzy • Izzy
0 votes
1 reply
1.0K views
ClinSV issue
clinsv cnvcalling docker
updated by Charles R. • Charles R. • written by Jordi • Jordi
0 votes
1 reply
949 views
Design matrix after RUVg correction
limma ruvseq differential-expression
updated by Ram Ram • written by Shaimaa Gamal • Shaimaa Gamal
0 votes
1 reply
720 views
ROC Curve
curve roc python r
written by shabbas12 • shabbas12
0 votes
4 replies
2.3K views
How to reference input variable in output section of rule of Snakemake rule
python snakemake
updated by Ram Ram • written by Dhatri Badri • Dhatri Badri
0 votes
2 replies
1.3K views
Feature.extract(SeqRecord) misses features
biopython
updated by Ram Ram • written by niklas • niklas
0 votes
2 replies
838 views
different numbers of genes for WGCNA and Differential expression
wgcna edger differential-expression
updated by allingt • allingt • written by Gail • Gail
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