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joreamayarom
joreamayarom
Reputation:
140
Joined:
11.2 years ago
Last seen:
2.5 years ago
Location:
USA/Cambridge
Latest posts by user
0 votes
2 replies
1.2K views
Why does Biopython's SeqIO.parse() truncate sequences when it encounters repeated bases?
biopython
updated by Joe Joe • written by joreamayarom joreamayarom
0 votes
1 reply
1.3K views
Is there a suit of scripts to process CLUMPAK's output?
clumpak admixture
written by joreamayarom joreamayarom
1 vote
0 replies
0 views
Comment: C: Problems when parsing VCF file with Python
written by joreamayarom joreamayarom
0 votes
2 replies
2.4K views
Problems when parsing VCF file with Python
python vcf
updated by Istvan Albert Istvan Albert • written by joreamayarom joreamayarom
0 votes
0 replies
1.6K views
Stampy and malformed BAM files?
stampy mapping bam
written by joreamayarom joreamayarom
0 votes
2 replies
2.9K views
How good are bwa-mem and stampy when dealing with low quality reads?
bwa mapping
written by joreamayarom joreamayarom
0 votes
1 reply
0 views
Comment: C: Malformed BAM file produced by BWA
written by joreamayarom joreamayarom
1 vote
1 reply
0 views
Comment: C: Malformed BAM file produced by BWA
written by joreamayarom joreamayarom
0 votes
6 replies
4.3K views
Malformed BAM file produced by BWA
gatk samtools picard
updated by Pierre Lindenbaum Pierre Lindenbaum • written by joreamayarom joreamayarom
0 votes
1 reply
2.3K views
How to load megacc output into R?
r mega
updated by Nick • Nick • written by joreamayarom joreamayarom
0 votes
1 reply
2.2K views
Create a phylogenetic tree with a bar at the end?
phylogeny tree
updated by WouterDeCoster WouterDeCoster • written by joreamayarom joreamayarom
0 votes
1 reply
2.3K views
Phylogenies: Is PAUP compatible with ETE 3?
phylogenies paup trees
updated by Brice Sarver Brice Sarver • written by joreamayarom joreamayarom
0 votes
1 reply
2.6K views
Edit Seq object with Biopython
python biopython
updated by Ram Ram • written by joreamayarom joreamayarom
1 vote
2 replies
0 views
Comment: C: CIGAR and query sequence are of different length when trying to convert from sam
written by joreamayarom joreamayarom
0 votes
6 replies
12K views
CIGAR and query sequence are of different length when trying to convert from sam to bam?
samtools sam bam
written by joreamayarom joreamayarom
0 votes
1 reply
1 view
Comment: C: Most efficient way to trim overhanging bases after alignment
written by joreamayarom joreamayarom
11 votes
0 replies
1 view
Comment: C: Multiline Fasta To Single Line Fasta
written by joreamayarom joreamayarom
0 votes
5 replies
4.1K views
Most efficient way to trim overhanging bases after alignment
muscle fasta
updated by Suzanne Suzanne • written by joreamayarom joreamayarom
1 vote
1 reply
3.7K views
What might explain the "[blastall] ERROR: Arguments must start with '-'" error in my code?
blast
updated by h.mon h.mon • written by joreamayarom joreamayarom
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