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1 vote
0 replies
1.1K views
Job: Postdoctoral researcher in computational (epi)genomics (Maastricht, The Netherlands)
long-read-sequencing postdoc homo-sapiens repetitive-elements epigenetics
updated by Ram Ram • written by Athina Vidaki • Athina Vidaki
2 votes
0 replies
1.0K views
Herald: The Biostar Herald for Monday, February 12, 2024
herald
written by Biostar Biostar
0 votes
1 reply
2.5K views
How to get raw mRNA count from Seurat converted anndata
anndata seurat
updated by jv jv • written by gradstudent • gradstudent
0 votes
0 replies
648 views
Seeking Guidance on Standardization Methods for eQTL Analyses with Diverse Preprocessing Techniques
gwas eqtl gene-expression
updated by Ram Ram • written by DS • DS
1 vote
5 replies
2.8K views
cellranger error message
multiplexing cellranger
updated by Julian • Julian • written by Alivia • Alivia
0 votes
0 replies
523 views
miRNAs biogenesis tools
mirnas biogenesis
written by karlaarz • karlaarz
0 votes
1 reply
852 views
IntronicParts vs. intronsByTranscript
genomicfeatures genomicranges
updated by PK • PK • written by kethselly • kethselly
0 votes
1 reply
1.2K views
Exon often targeted by mobile element insertions?
epigenetics biology
updated by benformatics benformatics • written by German.M.Demidov German.M.Demidov
0 votes
0 replies
538 views
bulk RNA-seq data for triple negative breast cancer cell lines
tnbc breastcancer rnaseq celllines
written by bstrs • bstrs
0 votes
0 replies
924 views
News: NGS Data Analysis Courses for Absolute Beginners
ngs dnaseq rnaseq singlecellsequencing dataanalysis
written by David Langenberger David Langenberger
1 vote
2 replies
1.4K views
Transcript feature coverage with coverage of each feature shown like e.g. UTR's CDS, exons etc
rseqc
updated by Huiyang • Huiyang • written by Saad Khan Saad Khan
0 votes
4 replies
1.8K views
Should I exclude unmapped reads and proceed with the analysis for low mapped samples, or omit them altogether?
star mapping rnaseq
updated by dthorbur dthorbur • written by Sib • Sib
0 votes
1 reply
2.3K views
Calling variants with UMI-collapsed duplex consensus reads
mutect2 callduplexconsensusreads fgbio umi
updated by Ram Ram • written by blid11 • blid11
1 vote
2 replies
16K views
JoinLayers to find markers in merged or integrated analysis in seurat
scrna-seq seurat findmarkers
written by mohammedtoufiq91 mohammedtoufiq91
0 votes
11 replies
2.5K views
mtDNA Cyclic Sequence Alignment CSAtool
mtdna alignment csa
updated by GenoMax GenoMax • written by marco.barr • marco.barr
0 votes
5 replies
1.8K views
Multiple sequence alignment images
msa r ggmsa jalview
written by alslonik alslonik
1 vote
1 reply
1.5K views
What does PCA really tells about Biological data?
techniques reduction dimension pca
updated by Philipp Bayer Philipp Bayer • written by WUSCHEL WUSCHEL
4 votes
12 replies
19K views
ERROR: failed to find the gene identifier attribute in the 9th column of the provided GTF file.
featurecounts
updated by BioinfGuru BioinfGuru • written by chatterjee.arumoy • chatterjee.arumoy
0 votes
0 replies
453 views
eCLIP barcode extraction
eclip barcodes randomer
written by Pac314 • Pac314
0 votes
14 replies
3.4K views
Bowtie alignment
bowtie2 singletons
written by daffodil • daffodil
0 votes
7 replies
3.1K views
How do I use md5sum to check if my .fastq files from SRA Explorer have been downloaded correctly
scrna-seq md5
updated by ATpoint ATpoint • written by biotrekker • biotrekker
0 votes
6 replies
1.8K views
Degenerate primers
trimming
updated by Ram Ram • written by M1985 • M1985
0 votes
1 reply
1.3K views
Distance index computation during `vg --autoindex` takes too long with one GFA file but not with the other.
vg giraffe
updated by Jordan M Eizenga • Jordan M Eizenga • written by Harsh • Harsh
0 votes
0 replies
633 views
Scores in multimir R package
r mirna mirdb multimir targetscan
written by Serij´s • Serij´s
0 votes
0 replies
636 views
News: Online course: Genome Assembly and Annotation
annotation genome-assembly nanopore pacbio
updated by Ram Ram • written by Physalia-courses Physalia-courses
0 votes
1 reply
1.2K views
Trouble making a ggmsa alignment plot
r ggmsa
updated by GenoMax GenoMax • written by andre.arrudalima • andre.arrudalima
0 votes
8 replies
2.3K views
Adapter Removing
fastqc
updated by a.alnawfal.1992 a.alnawfal.1992 • written by daffodil • daffodil
0 votes
5 replies
1.5K views
DEPTH IN GBS
samtools
updated by cmdcolin cmdcolin • written by Michelle Guerra • Michelle Guerra
0 votes
3 replies
1.4K views
BioPython phylo: collapsing nodes on tree if node in list and rename the respective collapsed node
phylogeny biopython
updated by Ram Ram • written by Naomi Sun • Naomi Sun
0 votes
2 replies
1.2K views
cover depth estimation with samtools depth and mpileup
samtools mpileup depth
updated by Huiyang • Huiyang • written by Ирина • Ирина
0 votes
0 replies
541 views
How to design and formulate a pathway to computationally study genes associated with certain linked phenotypes?
genomics evolutionary-biology
updated by Ram Ram • written by amit99.success • amit99.success
0 votes
3 replies
1.4K views
Splitting scRNA seq data from Multiome data(scRNA+ scATAC)
scrna-seq signac
updated by Ram Ram • written by gradstudent • gradstudent
0 votes
4 replies
2.9K views
Get original format information from SRA metadata
sra sradb metadata pysradb sqlite3
updated by predeus predeus • written by mariafirulevabio • mariafirulevabio
0 votes
2 replies
1.2K views
Problem with survival analysis with gene symbols containing hyphen
r survival-analysis
written by nazaninhoseinkhan nazaninhoseinkhan
0 votes
3 replies
1.7K views
Normalization of combined normal and tumor tissue samples from GTEx and TCGA prior to CIBERSORTx devconvolution
gtex cibersort tcga rna normalization
updated by jv jv • written by star • star
0 votes
0 replies
505 views
hierarchical clustering : color the branches of the dendrogram based on the sample types
r hierarchical-clustering
written by sanaz • sanaz
0 votes
1 reply
1.2K views
How to identify hub genes in Cytoscape from a WGCNA output?
wgcna cytoscape
updated by Ram Ram • written by pavelasquezv • pavelasquezv
0 votes
1 reply
1.1K views
Adonis2 inR
ggplot2 adonis
updated by Ram Ram • written by rene.j.erhardt • rene.j.erhardt
0 votes
1 reply
952 views
Clumpify then Salmon?
salmon rna-seq clumpify
updated by Ram Ram • written by JMB • JMB
0 votes
3 replies
2.0K views
Get mRNA sequence from amino acid sequence using BioPython
protein biopython fasta
updated by Ram Ram • written by brunofelicianodeomena • brunofelicianodeomena
0 votes
2 replies
1.5K views
TPM or RPKM for Metagenomic Contig Abundance
rpkm metagenomics tpm rna-seq
updated by SergFly • SergFly • written by joshua.kirsch • joshua.kirsch
0 votes
2 replies
1.4K views
Attempting to Use circlator running into issues with CANU
canu circlator
written by dlera.lozano • dlera.lozano
0 votes
0 replies
1.8K views
Job: Job Vacancy Announcement - Health Scientist Administrator (Program Officer) - Genomics Research Branch (GRB)(Branch Chief: Jonathan Pevsner)
genetics program-officer genomics
updated by Ram Ram • written by NIMH Search • NIMH Search
0 votes
0 replies
703 views
Sequence alignment similarity score including weakly conserved groups
alignment protein sequence
updated by Ram Ram • written by Hansen_869 • Hansen_869
0 votes
5 replies
2.4K views
PCA from plink2 for SGDP using a pangenome and DeepVariant
umap deepvariant pangenome plink2 pca
updated by DBScan • DBScan • written by Matteo Ungaro • Matteo Ungaro
0 votes
1 reply
861 views
Which FLASH parameters to use?
paired-end flash single-end merged
updated by GenoMax GenoMax • written by Elisa • Elisa
0 votes
5 replies
2.1K views
Sequence alignment matrix
alignment protein sequence
updated by Mensur Dlakic Mensur Dlakic • written by Hansen_869 • Hansen_869
1 vote
5 replies
2.1K views
Illumina NextSeq 500 Read Length
ngs read nextseq
updated by jv jv • written by Bushra Bibi Bushra Bibi
0 votes
2 replies
1.7K views
UMI workflow resulting in bams with empty reads
umi
written by ww22runner • ww22runner
0 votes
8 replies
2.7K views
Moderate Mapping percentage
trimmomatic ngs rna-seq
written by Researcher • Researcher
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