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0 votes
0 replies
557 views
Circle plot multi_fasta circular sequences
circle-plot fasta
updated by Ram 4.5K • | written by marco.barr 22
0 votes
0 replies
671 views
WebAUGUSTUS training support
webaugustus augustus
written by Kinoppy 0
0 votes
0 replies
999 views
Tool: 16S Data Analysis in R: Comprehensive Phyloseq-based Microbiome Data Downstream Analysis & Visualization Workflow - From Feature Table to Figures in Minutes
phyloseq analysis 16s microbiome r
written by camillatafuro 0
0 votes
4 replies
1.5K views
Differential expression at pathway level
gsva
updated by AquaDeath 8 • | written by Chris 36
0 votes
5 replies
1.7K views
How to calculate insert size and Stdev of insert file for Configure file of MaSuRCA assembly ?
masurca insert-size assembly
updated by Ram 4.5K • | written by Sony Nguyen 2
0 votes
0 replies
544 views
News: Online course: Model-Based Demographic Inference from Population Genomics
demographic-inference population-genomics demographic-models
updated by Ram 4.5K • | written by Physalia-courses 281
0 votes
2 replies
2.0K views
Biopython reference SASA values for 20 amino acids?
pdb structure biopython sasa
written by Nick 4
0 votes
1 reply
1.4K views
How to assess performance of a GWAS analysis pipeline
benchmark hail gwas performance
updated by Ram 4.5K • | written by lsy9 2
0 votes
2 replies
914 views
Traveler with Infernal mapping failed
r2dt
updated by anton.i.petrov 0 • | written by Larissa 0
1 vote
0 replies
915 views
Forum: list of bioinformatics tools in cancer genomics
mutations cna cancer genomics loh
updated by Pierre Lindenbaum 17K • | written by Bogdan 144
2 votes
10 replies
12K views
fastq compression tools of choice
fastq compression
updated by Xi 0 • | written by Richard 60
0 votes
2 replies
1.4K views
model.matrix in EdgeR to account for batch effects with multiple samples
edger design batch
written by Ann 4
0 votes
1 reply
670 views
UMI and index sequence in RNA-seq data
rna-seq
updated by Chris Dean 42 • | written by aminijavad4 1
0 votes
0 replies
581 views
Extracting mutation and Mutation spectrum
mutation-plot sars-cov-2
updated by Ram 4.5K • | written by realtreeecat 0
0 votes
0 replies
545 views
Prediction of the active site of a protein complex
ghecom active-site
updated by Ram 4.5K • | written by Curious 1
0 votes
1 reply
697 views
Phylogenetic analysis of Nucleic Acid Sequence
phylogenetic-analysis
updated by Ram 4.5K • | written by Winnifred 0
0 votes
1 reply
1.2K views
Database of gene names and synonyms across species
database genes
updated by noodle 65 • | written by dolphin-sea 0
0 votes
3 replies
1.3K views
GWAS drug-genes
drug gwas genomics
updated by LauferVA 497 • | written by aj123 14
0 votes
1 reply
941 views
extracting multiple sequence alignment from bigMaf
bigmaf
updated by gubrins 35 • | written by Zhang 0
0 votes
2 replies
2.3K views
I keep getting error ( code 3) while doing fasterq-dump
fasterq-dump sra-toolkit fastq-dump
updated by Pierre Lindenbaum 17K • | written by naveedhasan2000 1
0 votes
7 replies
2.2K views
Bioconductor packages
biocmanager bioconductor
updated by Michael Dondrup 5.6K • | written by mrashad 9
0 votes
0 replies
714 views
Enzyme in Pathview
r metabolomic kegg pathview
updated by Pierre Lindenbaum 17K • | written by CECEL 0
0 votes
0 replies
776 views
ROH with genome in scaffolds
roh scaffolds busco whole-genome
written by Kimbeer 0
0 votes
2 replies
1.1K views
Converting SNP data table into .traw format or qtl (R) format
r snp traw qtl
written by iaagosch 0
0 votes
0 replies
665 views
Looking for free access medical related data bases
literature-search publication data-mining
updated by Ram 4.5K • | written by damejiab 0
0 votes
9 replies
4.3K views
keep getting error with psiblast
psiblast python blast
updated by fznajar 0 • | written by Mo 92
0 votes
2 replies
1.3K views
Normalization of Bigwig file
atac bigwig
updated by Ram 4.5K • | written by daffodil 1
0 votes
2 replies
1.1K views
genomecov -d -pc -ibam showing no coverage for every position
transcriptomics genomecov bedtools rna-seq
updated by ATpoint 9.1K • | written by Gabrielle 0
0 votes
1 reply
1.1K views
LOFTEE flag on GnomAD - END_TRUNC
loftee gnomad
updated by Pierre Lindenbaum 17K • | written by hello_bioinf 25
0 votes
2 replies
893 views
Difference in count values depends on tool and reference genome version
rna-seq
updated by Ram 4.5K • | written by shome 1
0 votes
2 replies
1.4K views
Bayesian Differential Expression
deseq2 edger limma bayesian
written by thyleal 16
0 votes
2 replies
1.8K views
Fast tool for FASTQ Q30 calculation
q30 fastq q20
updated by Ram 4.5K • | written by emma.a 13
0 votes
0 replies
662 views
ChromVAR filterPeaks error
atac-seq chromvar filferpeaks
written by maplewj 2
1 vote
0 replies
780 views
Deconvolution: bulk and cell signature data from different platforms or technologies
cibersort rnaseq microarray deconvolution signature
written by zhang.jianhai 3
0 votes
2 replies
966 views
Processing FASTQ Files
viewing fastq metrics
written by Carla 0
1 vote
1 reply
1.1K views
Cytoscape to visualize metanodes
graph examine cytoscape
updated by xanderpico 58 • | written by Giovanni 1
1 vote
8 replies
2.3K views
Can edgeR be used to find (over/under)represented sequences in fastq files?
fastq edger rnaseq
written by AquaDeath 8
0 votes
3 replies
3.2K views
samtools index error - "Unsorted positions on sequence" even though file is sorted
samtools alignment bam
updated by Pierre Lindenbaum 17K • | written by Geoffrey 0
0 votes
5 replies
1.8K views
Blastn frozen
blastn ncbi blast remote-blast
written by Begonia_pavonina 22
0 votes
2 replies
1.4K views
3 questions about module membership vs gene significance
wgcna
updated by Mensur Dlakic 3.0K • | written by demoraesdiogo2017 12
0 votes
9 replies
3.0K views
How to accelerate BLASTING
ncbi blast sequence
written by anikcropscience 28
0 votes
5 replies
2.0K views
AlphaFold2 Colab
alphafold
updated by Ram 4.5K • | written by Preeti 0
0 votes
3 replies
3.2K views
Trying to work with the NCBI's Entrez api using python.
biopython python ncbi
updated by ninastanisic4 0 • | written by gdizzle12 0
0 votes
2 replies
1.3K views
Deep Sequencing vs Shallow Sequencing but repeated several times
transcriptomics star rnaseq
updated by dthorbur 350 • | written by andrebolerbarros 0
0 votes
1 reply
938 views
Heteroscedasticity in RNA-seq data
rna-seq statistics
updated by i.sudbery 2.3K • | written by ToTheMoon 0
0 votes
1 reply
1.5K views
phyloseq_filter_prevalence, non zero dimension
phyloseq
updated by Yunliang 0 • | written by junghwachoi96 0
0 votes
5 replies
1.4K views
Count table statistical analysis
count-table statistical-analysis
updated by Ram 4.5K • | written by ToTheMoon 0
0 votes
1 reply
810 views
Cytoscape for set-oriented Analysis of different species
graph examine cytoscape
updated by xanderpico 58 • | written by Giovanni 1
0 votes
3 replies
1.5K views
Problem with SUPPA2 Psi calculation
alternative-splicing suppa2
updated by Ram 4.5K • | written by achanda 0
0 votes
0 replies
635 views
sequencing results of CRISPR base edit
crispr chromatogram
updated by Ram 4.5K • | written by hmiller 0
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