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0 votes
1 reply
4.1K views
Impact of k-mer length for kraken2 database
sequence
updated by Dave • Dave • written by josmos43 • josmos43
1 vote
4 replies
3.6K views
Bacterial genome assembly, best uses of reads at excessively high sequencing depth?
bacteria pacbiohifi assembly coverage genome
written by ian.will • ian.will
0 votes
7 replies
2.6K views
hg38 goldenPath cpgIsland is down?
cpg ucsc goldenpath annotatr cpgisland
updated by Maximilian Haeussler Maximilian Haeussler • written by mariatmaria • mariatmaria
0 votes
0 replies
715 views
News: Online course: R/Bioconductor for Mass Spectrometry and Proteomics
r proteomics bioconductor mass-spectrometry
updated by Ram Ram • written by Physalia-courses Physalia-courses
0 votes
2 replies
1.0K views
How to use gsub inside mapply to assign names to Seurat objects
scatac-seq seurat
updated by Ram Ram • written by kousi31 • kousi31
0 votes
0 replies
406 views
GENIE3
linklist genie3 regulators
written by r.shiasi3897 • r.shiasi3897
0 votes
4 replies
1.5K views
Identifying non-paralogous protein or nucleic acid sequences without using CD-HIT
cd-hit
updated by Ram Ram • written by koushiksarker1977 • koushiksarker1977
0 votes
1 reply
1.0K views
Issue with cDNA PCR artifact in RNA-Seq dataset
pcr rna-seq artifact cdna
updated by Matthias Zepper Matthias Zepper • written by metzgeryonatan • metzgeryonatan
0 votes
0 replies
667 views
Proteomics : imputation of missing values in all replicates
proteomics
written by lagartija lagartija
0 votes
2 replies
953 views
STAR install error
star
written by mnx0723 • mnx0723
0 votes
5 replies
1.5K views
Depth of aligned fragments
pcr depth
updated by GenoMax GenoMax • written by saifulislam99121 • saifulislam99121
4 votes
12 replies
4.8K views
Tool: PanDepth, an ultra-fast and efficient genomic tool for coverage calculation
bam paf depth cram coverage
written by Huiyang • Huiyang
1 vote
2 replies
1.7K views
Linear Mixed-Effects Model Coefficient Interpretation
lmer mixed-effects r modeling
written by BioNovice247 • BioNovice247
0 votes
0 replies
752 views
Struggling to use the compare cluster function in Cluster Profiler
r proteomics
updated by Ram Ram • written by S'bonelo Glen • S'bonelo Glen
0 votes
3 replies
2.5K views
reading scRNAseq .h5 file into anndata format from GEO - No clear matrix?
rna-seq
updated by bk11 • bk11 • written by charlieclark1ee • charlieclark1ee
0 votes
5 replies
4.6K views
What is chr EBV in human sam file?
sam bowtie2
updated by scofio • scofio • written by salamandra salamandra
0 votes
2 replies
1.2K views
Why does Biopython's SeqIO.parse() truncate sequences when it encounters repeated bases?
biopython
updated by Joe Joe • written by joreamayarom joreamayarom
0 votes
0 replies
681 views
News: Virtual Workshops with the UConn Computational Biology Core
workshop genomics
updated by GenoMax GenoMax • written by mia.nahom • mia.nahom
0 votes
3 replies
1.5K views
Why remove multiallelic sites ?
sites multiallelic
updated by Ram Ram • written by Andrea Catalina • Andrea Catalina
0 votes
0 replies
1.0K views
cannot plot with rmats2sashimiplot
rmats2sashimiplot rmats
written by thomas.heigl.ibk • thomas.heigl.ibk
1 vote
3 replies
1.1K views
Single cell analysis of Cancer
cancer single-cell rna-seq
updated by GenoMax GenoMax • written by moustafa_abohawya • moustafa_abohawya
0 votes
1 reply
1.1K views
GWAS on unbalanced case-control UKB dataset using PLINK2
unbalanced plink2 ukb case-control
updated by bk11 • bk11 • written by DobraVila • DobraVila
0 votes
1 reply
1.2K views
Why am I receiving an error with RUVg in RUVseq
ruvseq batch-correction rna-seq
updated by jv jv • written by mnagy1716 • mnagy1716
0 votes
1 reply
866 views
Strange distribution of logFC values after searching for significantly differentially expressed genes
limma
written by Robert • Robert
0 votes
4 replies
1.9K views
Enrichment Analysis with Fisher's exact test
enrichment fisher
updated by i.sudbery i.sudbery • written by beepboop • beepboop
0 votes
4 replies
2.2K views
Obtain a --gene-trans-map file after rnaSPAdes
rnaspades trinity
updated by weidonglu • weidonglu • written by UserA • UserA
0 votes
1 reply
715 views
How can I determine the p-value of genes within each identified module in WGCNA?
wgcna exportnetworktocytoscape
updated by allingt • allingt • written by hiamour • hiamour
0 votes
3 replies
1.7K views
Need suggestions for ROC Curve in R
curve roc python r
updated by bk11 • bk11 • written by shabbas12 • shabbas12
0 votes
5 replies
2.6K views
Jellyfish & Paired end reads
jellyfish genome-assembly kmer
updated by Darked89 Darked89 • written by joshua.j.wright • joshua.j.wright
0 votes
0 replies
1.1K views
Job: PhD fellowship in bioinformatic analysis of host - pathogen interactions in the context of anti-microbial resistance in pigs
non-coding-rna
updated by Ram Ram • written by info info
0 votes
0 replies
618 views
Conservation score using phastCons
ucsc phastcons conservation multiz100way
written by didemdkn • didemdkn
1 vote
2 replies
3.0K views
Guided genome assembly
genome pacbio reads assembly
updated by dthorbur dthorbur • written by san96 • san96
0 votes
1 reply
810 views
#Bismark Methylation mapping Error
bismark0.24 multicore methylation
updated by GenoMax GenoMax • written by Nai • Nai
0 votes
3 replies
1.9K views
Pacbio Longread Depth of coverage
longread pacbio coverage
updated by Bas • Bas • written by hellbio hellbio
0 votes
2 replies
1.2K views
How to convert Mummer coords output to a Bed file?
nucmer mummer bed
updated by Ram Ram • written by Biologist Biologist
0 votes
0 replies
880 views
Job: Project Scientist in Molecular Biology at UC San Diego
ucsd biology lifescience highereducation
written by UCSDBioSci • UCSDBioSci
0 votes
1 reply
1.4K views
Amphora2: Illegal division by zero at Phylotyping.pl line 132
phylotyping amphora2 phylogenetic
updated by Ram Ram • written by sanzeev.dahal • sanzeev.dahal
0 votes
1 reply
690 views
X chromosome inactivation
x-inactivation
updated by bk11 • bk11 • written by deneusmozart • deneusmozart
0 votes
0 replies
547 views
How to present the metabolic pathway / gene differences between two metagenome samples?
visualization metagenomics
written by jway • jway
1 vote
3 replies
1.5K views
Job: Looking for bioinformatics help
genomics
updated by Ram Ram • written by aj123 aj123
1 vote
3 replies
1.9K views
Expedite alphafold2 or RoseTTAFold for bulk jobs
alphafold protein-structure
updated by Ram Ram • written by btski • btski
2 votes
4 replies
2.8K views
Is there any free online tool where I can do online docking studies of 1000 ligands with a single protein in a single step .
docking
updated by keaun • keaun • written by Manoj Manoj
0 votes
4 replies
1.8K views
PRSice and R lm() show different association analysis output (coefficient, SE and P)
prs prsice2 ukbb
updated by Sam Sam • written by Salahuddin • Salahuddin
0 votes
2 replies
1.3K views
vcf-validator could not parse the alleles
vcf-validator vcftools vcf
written by ekirsch • ekirsch
0 votes
0 replies
696 views
10X cellranger-atac generated bed files for DifBind
diffbind 10x bed cellranger-atac
updated by Ram Ram • written by iliyal • iliyal
0 votes
3 replies
1.5K views
Coordinates of CDS sequence
cds genbank fasta
updated by Mensur Dlakic Mensur Dlakic • written by hemr3 • hemr3
0 votes
1 reply
857 views
RNA-Seq | DESeq2 | differentially expressed genes | Dispersion
degs dispersion deseq2
updated by BioinfGuru BioinfGuru • written by Dominic • Dominic
0 votes
2 replies
1.6K views
Significance of P value in GSEA
gsea p-value
updated by jv jv • written by Pumla • Pumla
0 votes
7 replies
2.6K views
How to subsample from multiple fastq files using seqtk command
seqtk
updated by Ram Ram • written by neha.jnu463 • neha.jnu463
0 votes
2 replies
1.3K views
bcftools merging 3540 individual files
bcftools
written by realtreeecat • realtreeecat
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