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0 votes
10 replies
2.4K views
Message seen when performing alignment
bwa alignment
updated by GenoMax 16K • | written by K 0
0 votes
2 replies
2.3K views
Problem with interpreting output from Monocle3 graph_test()
trajectory_analysis monocle3
updated by synat.keam 12 • | written by Angelina_G 1
0 votes
3 replies
1.2K views
gene coordinates data base
coordinates simulation gwas sim1000 gene
written by Eliza 3
0 votes
3 replies
1.3K views
transcriptomic data for molecular subtyping
molecular-subtyping
updated by mark.ziemann 199 • | written by mavy 1
1 vote
1 reply
1.0K views
Aneuploidy analysis from WGS
aneuploidy cnv wgs
updated by mark.ziemann 199 • | written by Thierry Waltrich 1
0 votes
0 replies
709 views
String version 11 directionality
ppi string direction
written by ysnuye 2
0 votes
2 replies
1.1K views
Sample clustering from 10X single cell
clustering
written by synat.keam 12
1 vote
3 replies
8.3K views
how to install conda bcftools +fill-tags plugin ?
bcftools
updated by Ram 4.5K • | written by Daniel 1
0 votes
2 replies
1.7K views
How to add motifs in cellranger-arc reference?
gtf scrnaseq fasta cellranger
updated by Ehsan 0 • | written by bioinfo 19
0 votes
1 reply
1.5K views
Gnomad MAF question
maf
updated by Ram 4.5K • | written by a615ebfb 8
0 votes
8 replies
2.1K views
Speeding up WGS analysis
wgs
updated by GenoMax 16K • | written by Trivas 191
1 vote
0 replies
1.3K views
Herald: The Biostar Herald for Tuesday, February 20, 2024
herald
written by Biostar 380
0 votes
6 replies
2.6K views
What is the expected number of common/mutual/shared SNVs between two, three, four... unrelated individuals?
snv genomics variation snp human
written by Joel Wallenius 22
0 votes
5 replies
1.9K views
How do I get utr transcript coordinates?
utr transcript
written by Salvatore 0
0 votes
0 replies
644 views
getDifferentialPeaksReplicates.pl Output on Up/Dn regulated in target
homer deseq2
updated by Ram 4.5K • | written by yee 0
0 votes
0 replies
847 views
Range for the score values for STRING PPI database
string ppi
updated by Ram 4.5K • | written by ysnuye 2
0 votes
6 replies
2.0K views
how to get entrez IDs from wormbase gene IDs
wormbase
written by leranwangcs 15
0 votes
3 replies
1.4K views
pseudobulk differential expression design matrix
pseudobulk single-cell scrna-seq
written by nhaus 44
0 votes
4 replies
1.7K views
ENA fastq file shown as single-end but has 2 fastq files: X.fastq.gz and Y.fastq.gz
fastq single-end ena
written by Aaliya 0
0 votes
0 replies
443 views
How to retrieve information on isolation location from NCBI?
ncbi isolation-location
updated by Ram 4.5K • | written by loy 0
0 votes
0 replies
570 views
How to get a UTR_CDS_Intron_Upstream_Downstream.bed file input of swDMR
gtf swdmr bed
written by jfelix 0
0 votes
11 replies
4.1K views
Locating IBD candidates with just VCF files
relatedness genotypes ibd haplotypes vcf
written by Joel Wallenius 22
0 votes
4 replies
1.4K views
Limma - normalizing gene expression data from multiple SRA experiments
edger limma rnaseq sra
written by peter.polacek 0
0 votes
1 reply
652 views
Protein - small molecule analysis
protein small-molecule
updated by dthorbur 350 • | written by roniozagam94 1
0 votes
0 replies
471 views
Help needed to prepare consensus including overhangs
alignment overhangs merging sequencing
written by Bikal 0
1 vote
5 replies
1.9K views
API way to find "Original submitter" files in SRA?
fastq sra
written by predeus 212
0 votes
0 replies
515 views
MultiGemini is not doing indel realignment, right?? Gemini does't work with single read?
multigemini
written by ManuelDB 11
0 votes
2 replies
1.1K views
How to visualize unique and overlapping genes in upSet R plot
r proteomics upsetr
written by S'bonelo Glen 0
0 votes
0 replies
431 views
Exomedepth doubt
exomedepth
updated by Pierre Lindenbaum 17K • | written by Smilesky 0
0 votes
2 replies
969 views
polyA anaysis in cDNA data using FLAMAnalysis
polyt polya nanopore cdna
written by bioinfo_ga 7
1 vote
8 replies
2.6K views
TCGA Biospecimens Slides Extraction
tcga
updated by Zhenyu Zhang 130 • | written by jain72744 1
0 votes
16 replies
3.8K views
hisat2 location does not exist
hisat2
updated by Ram 4.5K • | written by Eric 0
0 votes
2 replies
986 views
Subset overlapping regions to find the minimal number of non overlapping regions
overlap bedtools intersect
written by Geoffrey 0
0 votes
1 reply
958 views
Bumpy qq-plot
gemma emmax lmm gwas qqplot
updated by dthorbur 350 • | written by Luqman 0
0 votes
2 replies
3.2K views
ROSE Algorithm for Ranking Super Enhancers
chip-seq
updated by Ram 4.5K • | written by mropri 17
0 votes
7 replies
3.4K views
Forum: Tower Server configuration for NGS data analysis
ngs
updated by emma.a 13 • | written by harasharan 0
0 votes
1 reply
961 views
Job: FT Tenured Faculty Position at Washington University School of Medicine in St. Louis
neurogenomics fulltime missouri tenured faculty
updated by Ram 4.5K • | written by Christi 0
0 votes
7 replies
2.0K views
How to turn a column into a character string (to execute filterbyname.sh of the BBTools suite)
bbtools filterbyname.sh bash
updated by Ram 4.5K • | written by ella 0
0 votes
1 reply
3.2K views
T2T chm13 fasta and annotation files
ngs t2t-chm13 reference-genome
updated by Darked89 469 • | written by sarahmanderni 13
0 votes
2 replies
1.3K views
Phylogeny from mixed GBS and WGS
vcf phylogeny gbs wgs tree
written by maxrwjones 7
0 votes
2 replies
1.2K views
How can I create a sample characteristic/mutation plot in R?
r heatmap publication mutation
updated by Ram 4.5K • | written by db4761 0
0 votes
1 reply
818 views
Extract single chromosome reads from Bam file
bam reads extract samtools
updated by ATpoint 9.1K • | written by marco.barr 22
1 vote
5 replies
1.6K views
Filter out miRNA from ncRNA dataset
bowtie bowtie2 mirna filtering ncrna
updated by ATpoint 9.1K • | written by binaryCode 1
0 votes
1 reply
1.4K views
How to estimate -g genome-size for Flye for de novo genome or for --meta mode when using Metaflye?
assembly fasta genomics nanopore pacbio
updated by akshay 1 • | written by O.rka 75
0 votes
4 replies
1.6K views
Salmon index issue
salmon rnaseq
updated by Istvan Albert 10K • | written by Andrea 1
0 votes
3 replies
1.6K views
line 164: 15342 Segmentation fault (core dumped) ${cmd} ${options} - 0<&0
vcf2bed megarow bedops
updated by BioinfGuru 214 • | written by Niharika 0
0 votes
2 replies
850 views
BLAST Database error: No alias or index file found for protein database
protein blast
written by hrza_mar 0
0 votes
4 replies
1.6K views
How to find what is the most significantly modulated gene in GEO2R analysis?
gene geo geo2r
written by guntul 4
0 votes
2 replies
1.6K views
Separating bam file based on directionality / samtools view -F/-f option(s) appears to not do anything
ubuntu linux samtools
updated by Ram 4.5K • | written by Matthew 0
0 votes
4 replies
2.0K views
how to extract variants from the vcf.gz files linked below?
vcftools bcf vcf bcftools
written by Mahad 0
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