How to get a UTR_CDS_Intron_Upstream_Downstream.bed file input of swDMR · Biostar

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How to get a UTR_CDS_Intron_Upstream_Downstream.bed file input of swDMR

Hi! I'm trying to test swDMR (https://github.com/xflicsu/swDMR) in my RRBS-seq data, and I need a bed file input with the following information: chromossome, start, end, element(CDS, 5-UTR, 3-UTR, intron, upstream, downstream), strand, gene name. What would be a good strategy to extract a bed file with these information?

I tested this option, but I can't obtain the gene name information.

Thanks in advance!

gtf swdmr bed

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written 2.5 years ago by jfelix •

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