I am currently doing some exome analysis on Somatic samples where I am trying to do copy number analysis on tumor and matched normal samples …

A naive n00b question here. Title says it. We have some tumor samples that we're planning to sequence with a Nanostring 360 panel. We have …

Hi, We are trying to get the copy number variation of the tumor only samples (from bam files) using the below workflow (not having paired …

Hello, I a newbie in bioinformatics. I am now analyzing whole exome sequencing data, and the samples are normal tumor matched. I am currently using …

We have 95 pairs of samples (tumor v.s. normal) that are whole exome sequenced. We identified 5 tumor samples do not have matching normal samples, …

My overall goal is to perform CNV analysis on whole genome sequencing using a combinatorial approach (read depth + read pair or split pair). I …

Hello, We have data of tumor (Tissue) and Normal (Blood) control from the same patients. We want to call somatic and germline variants in the …

Hi. I was running ExomeDepth using my exome paired data with normal and tumor respectively. While running ExomeDepth, I am not sure this tool is …

<p>Dear all,</p> <p>I am wondering how to compare two separate groups that each contain paired tumor normal samples, so assuming we have this experimental setup:</p> …

Hi all, When you have matched tumor-normal SNParray samples and are concerned about underestimating the copy number profiles of your tumor sample because of tumor …