Normalization of Bigwig file
Hi,
I am wondering whether RPM or RPKM would be a suitable method of normalization for ATAC-seq data for generating BigWig files, and which would be preferable?
Best regards
• 1,234 views
•
link
updated
by
Ram
•
written
by
daffodil •
•
written
by
daffodil •
1 answer
My take on that: ATAC-seq sample normalization
Log in to answer this question.
More posts like this
-
CUT&Tag signal normalization for generating bigWig files
written by luminea •
-
Problem in calling peak by MACS3
written by daffodil •
-
qPRO-Seq analysis
written by daffodil •
-
merge replicate for bigWig files from macs2 peak calling
written by QX •
-
BigWig file Normalization
written by daffodil •
-
Recommended normalization procedure for CUT&Tag coverage file
written by Zain Arifin •
-
How to normalize the intensity of bigwig files based on a group of house-keeping genes in ATAC-seq …
written by Dan •
-
How can I filter/extract called peaks based on their peak height?
written by jiekwo1 •
-
Removing outliers from bigwig files
written by srhic •
-
When And Where Should I Rpkm,Fpkm And Rpm For Rnaseq Data Normalization
written by jack •
you asked BigWig file Normalization