This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Retrieving gene expression from tabula muris in R

Dear community,

I use to retrieve information related to gene expression from Tabula Muris directly in the browser. It only requires to select the tissue and type the gene name to get a table like the one in the image.

However, to do that for hundreds of genes I was wondering if I could use R. I tried some packages related to tabula Muris like the official one but I think there is no function to directly retrieve gene information like in the browser.

Does anyone know how to perform it automatically?

Thanks in advance, enter image description here

muris tabula

you can download data by tissue/organ in Seurat object format (and process in R) as described in the Data Availability section of the Tabula Muris manuscript

0 answers

No answers yet.

Log in to answer this question.