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Jordi
Jordi
Reputation:
60
Joined:
5.4 years ago
Last seen:
2.8 years ago
Location:
Switzerland

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Latest posts by user
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1 reply
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Comment: Comment: creating conda environment from snakemake rule
written by Jordi • Jordi
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2 replies
0 views
Comment: Comment: creating conda environment from snakemake rule
written by Jordi • Jordi
0 votes
6 replies
2.5K views
creating conda environment from snakemake rule
snakemake conda
written by Jordi • Jordi
0 votes
1 reply
1.2K views
IGV custom tracks from gff3 files; how to customize feature blocks "shape"?
visualization gff3 igv
updated by Pierre Lindenbaum Pierre Lindenbaum • written by Jordi • Jordi
0 votes
0 replies
1.1K views
Merging VCFs from same sample created by different variant callers and adding new INFO field for variant caller
deepvariant vcf bcftools haplotypecaller
updated by Ram Ram • written by Jordi • Jordi
0 votes
0 replies
990 views
Variant quality and filters on GATK HaplotypeCaller generated VCFs
vcf vqsr gatk cnnscorevariants
written by Jordi • Jordi
0 votes
1 reply
994 views
ClinSV issue
clinsv cnvcalling docker
updated by Charles R. • Charles R. • written by Jordi • Jordi
0 votes
0 replies
1.6K views
Variant quality scores with different variant caller: HaplotypeCaller vs DeepVariant. How to interpret the quality scores?
variant-calling deepvariant haplotypecaller quality-score
updated by Ram Ram • written by Jordi • Jordi
0 votes
0 replies
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Comment: Comment: GATK Input files reference and features have incompatible contigs: No overlappin
written by Jordi • Jordi
1 vote
1 reply
0 views
Comment: Comment: When to merge sequencing data from multiple lanes (FastQToSam, SamToFastq, BWA,
written by Jordi • Jordi
1 vote
3 replies
3.5K views
When to merge sequencing data from multiple lanes (FastQToSam, SamToFastq, BWA, MergeBamFiles, or additional step)?
alignment pipeline ngs picard sequencing
updated by lieven.sterck lieven.sterck • written by Jordi • Jordi
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0 replies
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Comment: Comment: bcftools stats output file specification?
written by Jordi • Jordi
0 votes
2 replies
4.6K views
bcftools stats output file specification?
bcftools stats
written by Jordi • Jordi
0 votes
0 replies
0 views
Comment: Comment: Picard MarkDuplicates failing without error message
written by Jordi • Jordi
0 votes
1 reply
0 views
Comment: Comment: Picard MarkDuplicates failing without error message
written by Jordi • Jordi
0 votes
0 replies
0 views
Comment: Comment: Picard MarkDuplicates failing without error message
written by Jordi • Jordi
0 votes
7 replies
3.6K views
Picard MarkDuplicates failing without error message
picard markduplicates bam gatk
updated by antonesibov • antonesibov • written by Jordi • Jordi
0 votes
1 reply
0 views
Comment: Comment: Discussion: Clinical genetics germline variants detection pipeline
written by Jordi • Jordi
0 votes
3 replies
2.1K views
Discussion: Clinical genetics germline variants detection pipeline
ngs gatk clinical pipeline genetics
updated by ATpoint ATpoint • written by Jordi • Jordi
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0 replies
0 views
Answer: Answer: How to know the positions of contigs in a reference genome
written by Jordi • Jordi
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