Hi all,

I am trying to run a bunch of genes through PAML (http://abacus.gene.ucl.ac.uk/software/paml.html) through model 2, NSsite 0,1,2,3,7 and 8 specified in the control file. PAML returned with this error message:

Error: model should be 0 in the batch run?.

I didn't encounter this error when testing with model 2, NSsite 0. Thus, I don't really understand why it's not working with multiple models specified. Please advise.

Thanks