Generate BED file
Hi,
My goal is to generate a BED file that includes chr, the name of the gene, the start and end, the score, as well as the strand of the gene. Could you please guide me on how to take this data and generate a bed file?
Best regards
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Which organism you want to create a bed file for? Do you have the annotations for the attributes you need? What have you tried, and where did you get stuck?
without more context or explanation :
I want to creat bed file from mouce (mm10). I don't have the annotation. Should I have to get that? and from where? I really I am not familiar with that. It would be appritiated if you could guide me ? should I take them from UCSC?
use https://genome.ucsc.edu/cgi-bin/hgTables with mm10,
Thank you so much for your response. I have downloded the file but I have a question how i can change the name of gene from NCBI (NM_12344) to gene symbols?