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117,136 results • Page
3 of 2343
Sort: Rank
Rank
Views
Votes
Replies
2
votes
4
replies
274
views
Allele count of 2 for homoplasmic MT variants in VCF
Variant-Calling
GATK
VCF
3 days ago by
Arton
▴ 10
1
vote
3
replies
203
views
downloading chemical database from ChEMBL
ChEMBL
PyRMD
Virtual-Screening
updated 4 days ago by
GenoMax
142k • written 4 days ago by
s
• 0
0
votes
3
replies
193
views
Where are the illumina adapters on Trimmomatic take from?
rna-seq
trimmomatic
updated 4 days ago by
GenoMax
142k • written 4 days ago by
bioinfo
▴ 150
3
votes
2
replies
187
views
Multiplexing for pooled CRISPR screen sequencing
multiplex
CRISPR-screen
Illumina
3 days ago by
Tuấn Anh
• 0
2
votes
4
replies
1.2k
views
Is it possible to run CibersortX with a very small number of samples?
cibersortx
3 days ago by
Aspire
▴ 330
1
vote
3
replies
310
views
Functional enrichment analysis for unique gene IDs
RNA-SEQ
4 days ago by
Pegasus
▴ 100
0
votes
2
replies
213
views
Comparing Analysis Strategies for scRNA-seq Data: Separate vs. Merged Analysis of Spleen Samples from Different Conditions
Seurat
scRNA-Seq
Single-Cell
4 days ago by
Shukai
• 0
1
vote
3
replies
207
views
Question about samtools view flags (paired reads vs. properly paired reads)
samtools
updated 4 days ago by
Pierre Lindenbaum
162k • written 5 days ago by
mrk
• 0
0
votes
3
replies
251
views
z-score of gene set
z-score
scRNA
gene-set
4 days ago by
Hien
• 0
3
votes
2
replies
215
views
converting transcript IDs (Ensembl) to gene symbols in R
RNA-seq
updated 4 days ago by
GenoMax
142k • written 5 days ago by
ashkan
▴ 160
0
votes
0
replies
110
views
Linking AMR Genes to Taxonomy in Soil Metagenomics
metagenomics
bacteria
wgs
AMR
resistome
updated 5 days ago by
GenoMax
142k • written 5 days ago by
LuciaNhu
• 0
1
vote
2
replies
192
views
How can we convert a vcf to fasta, so that I can blast some genes against that whole genome sequences?
blast
fasta
vcf
gene
updated 4 days ago by
Ram
44k • written 5 days ago by
Harshita
• 0
3
votes
0
replies
121
views
Comparing ATAC-seq narrowPeak Files from Chicken and Mouse
liftOver
ATAC-seq
csaw
updated 4 days ago by
Ram
44k • written 5 days ago by
Rafael Soler
★ 1.2k
0
votes
0
replies
140
views
Job:
PhD position for metagenomics analysis at the University of Udine
metagenomics
updated 4 days ago by
Ram
44k • written 5 days ago by
Fabio Marroni
★ 3.0k
3
votes
5
replies
485
views
Practical Haplotype Graph v2 not finding correct paths
Pangenome
PHG
graph
5 days ago by
beantkapoor16
▴ 10
0
votes
1
reply
140
views
DRAGEN gVCF files and joint calling GATK-GenomicsDB
DRAGEN
GenomicsDB
updated 5 days ago by
DBScan
▴ 310 • written 5 days ago by
brunomiwa
• 0
0
votes
0
replies
93
views
Last step of metagenome analysis before visualization
metagenome
python
analyis
5 days ago by
Ayda Ecem
• 0
0
votes
3
replies
180
views
Generating a Bed file from a Fasta file
bed
NullSeq
updated 4 days ago by
Ram
44k • written 5 days ago by
pirku
• 0
0
votes
3
replies
1.8k
views
Running STRUCTURE from command line
STRUCTURE
updated 4 days ago by
Ram
44k • written 3.0 years ago by
giulia.trauzzi
▴ 10
1
vote
3
replies
567
views
Pruning Phylogenetic Trees and Bootstrap Values
phylogenetics
bootstrap
updated 5 days ago by
Klaus S
▴ 160 • written 6 weeks ago by
Zeng Hao
▴ 40
0
votes
0
replies
92
views
Calculated LAI is too large
annotation
LAI
assembly
TE
genome
5 days ago by
Yao
▴ 30
1
vote
1
reply
741
views
Herald:
The Biostar Herald for Monday, November 01, 2021
herald
written 2.6 years ago by
Biostar
2.8k
19
votes
10
replies
7.4k
views
7 follow
T2T-CHM13 "complete" human genome gff/gtf annotation file
genomics
written 3.0 years ago by
noodle
▴ 590
0
votes
0
replies
94
views
How to recover the entire sequence from all_contig_annotations.csv?
VDJ
single-cell
TCR-seq
cellranger
10x
5 days ago by
dawnyipingzou
• 0
0
votes
4
replies
247
views
Where to find old version of GATK best practice
gatk
4 days ago by
Zhenyu Zhang
★ 1.2k
0
votes
1
reply
121
views
Nextflow docker: Error response from daemon
sarek
gatk4
docker
nextflow
updated 5 days ago by
Pierre Lindenbaum
162k • written 5 days ago by
Peter Chung
▴ 200
0
votes
0
replies
96
views
News:
Online course- Advanced Python for Life Sciences
Python-Programming
Data-Visualisation
Machine-Learning
updated 4 days ago by
Ram
44k • written 5 days ago by
carlopecoraro2
★ 2.5k
0
votes
2
replies
183
views
CreateSeuratObject taking very long
seurat
2 days ago by
eae6d2e7
• 0
1
vote
2
replies
217
views
Elbow plot question (scRNA seq data analysis - scanpy tutorial)
scanpy
5 days ago by
ojaswinipandey
• 0
1
vote
4
replies
318
views
How to find SRA sequences of some fungal whole genome sequences if only Biosample ID is available?
SRA
whole-genome-sequencing
NCBI
updated 5 days ago by
Ram
44k • written 5 days ago by
Harshita
• 0
2
votes
4
replies
249
views
Filter Genome for Specific Sites
bedtools
updated 5 days ago by
Ram
44k • written 5 days ago by
Anita
• 0
0
votes
3
replies
266
views
Error in using BioSampleParser tool: subscript out of bounds
R
updated 5 days ago by
marco.barr
▴ 130 • written 6 days ago by
Mohamed Samir
▴ 30
1
vote
1
reply
136
views
Generating Group/Cluster Lists from fastq files
Sequencing
RNA-seq
DNA-Seq
updated 6 days ago by
GenoMax
142k • written 6 days ago by
niruf
• 0
0
votes
0
replies
103
views
News:
Online course: Network analysis in Systems Biology with R/Bioconductor
Bioconductor
Systems-Biology
Network-Analysis
R
updated 5 days ago by
Ram
44k • written 6 days ago by
carlopecoraro2
★ 2.5k
3
votes
0
replies
147
views
Herald:
The Biostar Herald for Monday, May 20, 2024
herald
6 days ago by
Biostar
2.8k
3
votes
5
replies
452
views
Super ehancers
enhancers
updated 4 days ago by
jared.andrews07
★ 17k • written 24 days ago by
Oburah
• 0
0
votes
2
replies
194
views
vcf phasing
beagle
WhatsHap
phasing
4 days ago by
safeassli
▴ 10
0
votes
2
replies
217
views
How to generate an Upset plot in R to plot the shared variants between cell free DNA samples
r
Upset
5 days ago by
sainavyav22
• 0
0
votes
1
reply
617
views
Illumina methylation EPIC V2 array
ewas
methylation
enrichment
missMethyl
EPIC
updated 6 days ago by
fu_entomology
▴ 40 • written 8 months ago by
juliviglino
• 0
1
vote
2
replies
200
views
How to find identical sequences in genome fasta file (by Python or any possible program) ?
fasta
updated 6 days ago by
Ram
44k • written 6 days ago by
Sony
▴ 10
0
votes
3
replies
219
views
GATK Structural Variants Pipeline - Steps
SV
GATK
Variant-Calling
updated 6 days ago by
Ram
44k • written 6 days ago by
Bioinformatics_begginner
▴ 20
0
votes
0
replies
104
views
Is it possible to keep gene_id and gene_name columns using Seurat::Read10X?
Seurat
single-cell
scRNA-seq
updated 6 days ago by
Ram
44k • written 6 days ago by
ev97
▴ 20
0
votes
1
reply
148
views
GO analysis: Indicate genes corresponding to the pathway
GeneOntoloy
GO
R
updated 6 days ago by
marco.barr
▴ 130 • written 6 days ago by
sooni
▴ 20
0
votes
1
reply
116
views
How to hide label in layout file of MCscan (python version)
MCscan
updated 6 days ago by
GenoMax
142k • written 6 days ago by
jinyi
• 0
0
votes
0
replies
182
views
How to deal with possibly important predictors omitted during the building of an OLS multivariant linear regression model?
multivariant-linear-regression
updated 5 days ago by
Ram
44k • written 6 days ago by
JorgeVallejo
▴ 20
0
votes
0
replies
109
views
transcriptome annotation
annotation
trinity
transcriptome
updated 6 days ago by
Ram
44k • written 6 days ago by
Asim Bin Arshad
• 0
0
votes
5
replies
249
views
Why most genes have high padj values
RNA-seq
DEG
updated 6 days ago by
Ram
44k • written 6 days ago by
mnx0723
• 0
7
votes
14
replies
2.9k
views
6 follow
How to find tandem duplications pattern in a DNA sequence
Repeat
updated 6 days ago by
micah
▴ 30 • written 3.1 years ago by
kumajis
• 0
0
votes
1
reply
157
views
PCA Visualization error in R - arguments imply differing number of rows
SNPs
PCA
GBS
LINUX
r
updated 6 days ago by
zx8754
11k • written 6 days ago by
Ali
• 0
0
votes
4
replies
269
views
GO analysis: p-value range
GO
R
updated 6 days ago by
Matthias Zepper
4.6k • written 6 days ago by
sooni
▴ 20
117,136 results • Page
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Thank you for your response! Interesting paper.
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did you split by sample or donor ?
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If there are no other signs that anything is awry, I probably wouldn't worry about this. Is it possible that these non-canonical nucleotid…
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