Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : this week
all time
today
this week
this month
this year
172 results • Page
1 of 4
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
5
views
PseudobulkExpression.Seurat error
Seurat
pseudo-bulk
23 minutes ago by
sooni
▴ 20
1
vote
5
replies
296
views
HCL database download
database
HCL
human
27 minutes ago by
sooni
▴ 20
0
votes
1
reply
154
views
barcode of TCR-sequencing
barcode
updated 1 hour ago by
mizraelson
▴ 60 • written 7 days ago by
yueli7
▴ 250
0
votes
0
replies
27
views
STAR aligner error
STAR
alignment
slurm
RNAseq
mapping
2 hours ago by
M.
▴ 30
0
votes
0
replies
28
views
monocle 3-- Could not get node in small cluster
monocle3
3 hours ago by
synat.keam
▴ 100
0
votes
1
reply
63
views
Correlating Bulk Differential Expression with quantitative
Expression
Differential
DESeq2
updated 4 hours ago by
Qroid
▴ 40 • written 4 hours ago by
Nicholas
• 0
1
vote
4
replies
259
views
Understanding STAR output (Aligned.out.sam file)
STAR
paired-end
read
5 hours ago by
heelpPlease
• 0
5
votes
1
reply
97
views
TFs and Gene databases
Transcription-factor
Target
Regulatory-Networks
updated 4 hours ago by
Ram
43k • written 7 hours ago by
ijarne
• 0
0
votes
5
replies
271
views
Applying the metacell2 algorithm using python
python
single-cell
scanpy
metacell2
updated 4 hours ago by
Ram
43k • written 1 day ago by
JACKY
▴ 140
0
votes
3
replies
156
views
Filtering Multi-sample VCF file for all except one Genotype
variant
SNP
VCF
updated 4 hours ago by
Ram
43k • written 8 hours ago by
schmince
• 0
0
votes
0
replies
53
views
News:
Online course. -Time series analysis and Forecasting in R
Time-Series
Forecasting
R
Stastics
9 hours ago by
carlopecoraro2
★ 2.5k
0
votes
2
replies
399
views
HLA-HD tool for genomic imputation
genomics
imputation
bash
updated 3 hours ago by
Javier
• 0 • written 3 months ago by
fra.r.silvestro
▴ 10
0
votes
1
reply
80
views
ERROR: Duplicate entry "..." in sam header; samtools view: failed to add PG line to the header
sort.
SAMtools.
BAM.
SAM.
updated 10 hours ago by
GenoMax
142k • written 10 hours ago by
Sony
▴ 10
5
votes
5
replies
196
views
Error in dimnames(x) <- dn : length of 'dimnames' [2] not equal to array extent
EGSEA
1 hour ago by
Chris
▴ 280
0
votes
1
reply
89
views
Differentail gene expression results
differential
expression
gene
rna-seq
Deseq2
updated 12 hours ago by
ATpoint
82k • written 12 hours ago by
ahmad.sajad4541
• 0
1
vote
5
replies
156
views
UMI-Tools knee-method has great influence on the results of white list
single-cell
whitelist
UMI
RNA
UMI-Tools
updated 10 hours ago by
i.sudbery
19k • written 13 hours ago by
Assa Yeroslaviz
★ 1.8k
1
vote
1
reply
106
views
student
epitranscriptomics
updated 13 hours ago by
ATpoint
82k • written 13 hours ago by
useriwa
• 0
0
votes
0
replies
64
views
Imputation of missing genotypes
panel
beagle
imputation
13 hours ago by
analyst
▴ 30
0
votes
3
replies
124
views
trying to count a pattern in my fastq file using bbduk
java
bbduk
bbmap
fastq
updated 10 hours ago by
GenoMax
142k • written 14 hours ago by
Assa Yeroslaviz
★ 1.8k
5
votes
1
reply
98
views
Tutorial:
removeBatchEffect explained using base R linear models
limma
effects
batch
removebatcheffects
updated 14 hours ago by
dariober
14k • written 14 hours ago by
nhaus
▴ 340
1
vote
1
reply
72
views
Is therer any suggestions on mapping rate of WGBS data?
mapping
read
alignment
WGBS
updated 13 hours ago by
Papyrus
★ 2.9k • written 14 hours ago by
Zeng Jingyu
▴ 60
1
vote
2
replies
196
views
News:
We created a Bioinformatics Competition for Spatial Transcriptomics: MICOS-EU
cell-clustering
Spatial-transcriptomics
updated 14 hours ago by
Weiwen
• 0 • written 1 day ago by
MICOS
▴ 10
0
votes
0
replies
60
views
Correlation Analysis
statistics
methylation
NGS
expression
14 hours ago by
Researcher
▴ 30
1
vote
2
replies
126
views
Repeated testing/data mining in RNA Seq
repeated
RNA-Seq
mining
testing
data
8 hours ago by
robert.flynn.21
• 0
1
vote
1
reply
175
views
Tool:
Converting Nebula Genomics Data to 23andMe Format
23andMe
Nebula
updated 12 hours ago by
Michael
54k • written 1 day ago by
Guillermo
• 0
1
vote
1
reply
93
views
Gene density plot
density
gene
updated 9 hours ago by
dthorbur
★ 1.9k • written 15 hours ago by
gubrins
▴ 290
1
vote
4
replies
157
views
Comparative Analysis of Algorithms for Implementing the FM-Index: Correctness, Complexity, and Use Cases
fmindex
bwt
2 hours ago by
qwertyuiop26
• 0
0
votes
1
reply
125
views
What is the proper way to identify the cell types of scRNAseq cluster?
scRNAseq
updated 17 hours ago by
ATpoint
82k • written 1 day ago by
MAPK2
▴ 40
0
votes
2
replies
166
views
Job:
Bioinformatics Analyst - Laboratory Medicine and Pathology
job
updated 20 hours ago by
Xiaofen
• 0 • written 22 hours ago by
toddknutson
▴ 60
0
votes
1
reply
101
views
Seeking Guidance on Identifying Mutations in DARs from ATAC Data in Cancer Genomes
Genomics
Bioinformatics
ATACseq
CancerResearch
updated 1 day ago by
LChart
3.9k • written 1 day ago by
David
• 0
1
vote
2
replies
132
views
Where to get the following bed file?
WES
bed
reference
file
updated 1 day ago by
GenoMax
142k • written 1 day ago by
wyuan37
• 0
0
votes
0
replies
79
views
Get Paired TCRa/b from MIXCR
python
r
mixcr
tcr_seq
1 day ago by
Scott McKay
▴ 30
0
votes
0
replies
82
views
Cellphonedb results
cpdb
visulization
cellphonedb
1 day ago by
piotto
▴ 20
0
votes
0
replies
97
views
Job:
Post-doctoral Position in Alzheimer’s Disease Genetics, ‘Omics, and Biomarkers
Genomics
Alzheimer
multiomics
neuroimaging
1 day ago by
belloy
• 0
0
votes
3
replies
188
views
How to compute TPM normalized values for TCGA miRNA data?
TCGA
normalization
TPM
miRNA
updated 17 hours ago by
swbarnes2
14k • written 1 day ago by
Ngrin
• 0
1
vote
6
replies
654
views
anRichment is missing
WGCNA
anRichment
updated 1 day ago by
GenoMax
142k • written 5 months ago by
michael.flower.14
▴ 180
1
vote
1
reply
176
views
Gene ontology and homologs
gene-ontology
updated 1 day ago by
geneontologyhelp
▴ 400 • written 2 days ago by
beshka194
• 0
1
vote
2
replies
190
views
error in R code: Error in fit_avlr(...), : wn incorrectly formatted
R
updated 1 day ago by
zx8754
11k • written 1 day ago by
snajafy
• 0
0
votes
0
replies
88
views
Cox Model with interaction item interpretation
Cox
1 day ago by
Bine
▴ 60
0
votes
0
replies
80
views
how to downlad slices of CRAM fro ICGC ARGO
icgc
samtools
cram
1 day ago by
Javier
• 0
1
vote
6
replies
405
views
Question regarding WGCNA
WGCNA
Network-construction
updated 9 hours ago by
andres.firrincieli
3.6k • written 4 days ago by
deepak
• 0
0
votes
0
replies
88
views
vdjtools
vdjtools
1 day ago by
yueli7
▴ 250
1
vote
0
replies
116
views
Herald:
The Biostar Herald for Monday, May 06, 2024
herald
1 day ago by
Biostar
2.7k
0
votes
1
reply
140
views
16S rRNA microbiome differential abundance analysis with DESeq2 finds same microbial Genus in both groups.
microbiome
16S
DESeq2
updated 13 hours ago by
andres.firrincieli
3.6k • written 1 day ago by
Antonio
• 0
0
votes
0
replies
98
views
Error while loading model of Spatial data deconvolution using cell2location
Python
cell2location
updated 1 day ago by
Ram
43k • written 1 day ago by
sidrah.maryam
▴ 50
0
votes
0
replies
87
views
Normalizing AMR gene count data
abundance
RGI
updated 1 day ago by
Ram
43k • written 1 day ago by
arshad1292
▴ 100
0
votes
0
replies
99
views
Help with VG Toolkit: VCF Output is Empty
vg
updated 1 day ago by
Pierre Lindenbaum
161k • written 1 day ago by
sarumonsus
• 0
1
vote
2
replies
277
views
Tissue-specific DEG analysis with DEseq2
DEseq2
RNA-seq
DEG
R
1 day ago by
M.
▴ 30
0
votes
0
replies
106
views
How to implement an IGV to streamlit app?
python
streamlit
igv
1 day ago by
avigail.shnaider
• 0
1
vote
5
replies
282
views
install.packages("imudata") - package ‘imudata’ is not available for this version of R
r
updated 1 day ago by
Ram
43k • written 1 day ago by
snajafy
• 0
172 results • Page
1 of 4
Recent Votes
A: Download full list of SNPs and their coordinates in hg38
Answer: HCL database download
Answer: Tissue-specific DEG analysis with DEseq2
Answer: TFs and Gene databases
Answer: TFs and Gene databases
Comment: How to access TCGA samples that were treated with a specific drug?
Comment: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA
Recent Locations •
All
Indiana University,
5 minutes ago
Japan,
9 minutes ago
United States,
12 minutes ago
United States,
15 minutes ago
United States,
18 minutes ago
Russia,
21 minutes ago
Brazil/Recife,
28 minutes ago
Recent Awards •
All
Teacher
to
jared.andrews07
★ 16k
Popular Question
to
synat.keam
▴ 100
Popular Question
to
bioinf_sci
▴ 20
Popular Question
to
hafiz.talhamalik
▴ 350
Popular Question
to
Maxine
▴ 40
Popular Question
to
jleehan
▴ 120
Popular Question
to
Chris
▴ 280
Recent Replies
Answer: HCL database download
by
sooni
▴ 20
I solved the problem by conneting another internet exploer. I think it was probably a problem with Chrome itself.
Answer: barcode of TCR-sequencing
by
mizraelson
▴ 60
Hi, What protocol did you use for TCR-seq library preparation? Generally speaking, there is no need to remove barcodes, as MiXCR can work …
Comment: Comparative Analysis of Algorithms for Implementing the FM-Index: Correctness, C
by
qwertyuiop26
• 0
I've implemented fm index with backward search and need an inexact search to implement on FM index, I couldn't understand how fm index coul…
Comment: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA
by
Chris Dean
▴ 400
The md5 hash they refer to on line 22 (f46a7ca244afef522b22a11bd33d27b1) appears to map to a *S. aureus* strain, not *S. hominis* (you can …
Comment: Correlating Bulk Differential Expression with quantitative
by
Qroid
▴ 40
You could try including disease scale for each sample as a design factor. See the vignette here https://bioconductor.org/packages/devel/bio…
Comment: Help with generating annotation database for dog genome to use in ANNOVAR for v
by
sainavyav22
• 0
Hello, Thanks for the reply. I could only see the refMrna.fa file in the link you provided. Where can I get the refGene.txt file. Thanks fo…
Answer: Understanding STAR output (Aligned.out.sam file)
by
heelpPlease
• 0
After thoroughly reviewing all the documents again, I've identified the root cause of my initial issue: the failure to detect essential gen…
Comment: Understanding STAR output (Aligned.out.sam file)
by
heelpPlease
• 0
Thank you! Now that I understand that there is a difference between read and fragment, I could actually find a lot of helpful information..…
Comment: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA
by
sovrappensiero
▴ 90
Thanks again. Hmm...this makes me suspicious of whether this normalization is actually possible. In case you'd like to take a look, [here]…
Comment: Filtering Multi-sample VCF file for all except one Genotype
by
Jeremy Leipzig
22k
The seven genotypes being 58025AA, 58025AG, 58051TT, 58051TC, 58051CC, 58057TT, 58057TC
Answer: TFs and Gene databases
by
jared.andrews07
★ 16k
See [TFlink](https://tflink.net/), [KnockTF2](https://bio.liclab.net/KnockTFv2/index.php), [TFBSDB](https://tfbsdb.systemsbiology.net/), an…
Comment: Filtering Multi-sample VCF file for all except one Genotype
by
GenoMax
142k
> Seven genotpyes have been sampled and all variants, which belong to one of those genotpyes are to be "erased" (or every other variant exc…
Comment: Filtering Multi-sample VCF file for all except one Genotype
by
Pierre Lindenbaum
161k
> , filter a multisample VCF file for all genotypes except one of them filter for what ?
Answer: Applying the metacell2 algorithm using python
by
Wayne
★ 2.0k
I had hoped things like [this Jupyter notebook for the rabbit data analysis](https://nbviewer.org/github/tanaylab/rabembflow/blob/master/2-…
Comment: Help with running egsea()
by
1769mkc
★ 1.2k
please provide the design matrix mean the metadata of the model fit2 which is there in the code . i guess other users can help
Traffic: 1596 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6