Deleted:Imputation of missing genotypes

Question

[analyst]

Dear scientists,

I have to impute my variants (combined VCF file of multiple samples). I found Beagle tool for imputation in linux. I don't have idea about reference panel file why it is important when to use it and how to create it.

This is the command:

java -jar beagle.01Mar24.d36.jar gt=input.vcf out=imputed.vcf

Should I use impute parameter as well? If yes should it be true or false

Thankyou!