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Answer: How to generate table_annovar from VCF input?
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LucisTheFather
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Would you be more specific to your question? Do you mean how to debug this syntax error?
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hophuquy0944
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thank you
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Tony
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I think this method should be applicable to all high-throughput single-cell RNA-seq platforms.
Although the method of determining cell spec…
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The dataset you want (taestivum_eg_gene) exists within the "plants_mart" schema, not the default schema. Your current code assumes the defa…
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Nyksubuz
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You could use [this][1]
[1]: https://ggplot2.tidyverse.org/reference/geom_segment.html
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It might be because the gene symbol is not found in the KEGG database. Add some extra error handling before parsing the results or do a man…
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Thank you for your reply.
I am not very much sure about this RG. Can you explain me a bit?
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It seems that Alexandrov's [structural variant and copy number signatures][1] estimated by the [SigProfiler software ecosystem][2] aren't c…
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Then you may want to see if a program like `lastz` ([**LINK**][1]) may be useful.
[1]: https://github.com/lastz/lastz
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bk11
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Can you try this?
library(dplyr)
seuratobj@meta.data <- seuratobj@meta.data %>%
mutate(seurat_clusters = recode(seurat_clu…
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Thank you for the response but it does not change anything.
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I have not tested but you could try something like below-
seuratobj$seurat_clusters[seuratobj$seurat_clusters==5]=0
seuratobj$seur…
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I know about it, isn't there a simple C++ static binary?
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needle is great! but it does not handle sequences of 100k or so.
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