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Limit : this year
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1,000 results • Page
2 of 20
Sort: Rank
Rank
Views
Votes
Replies
0
votes
1
reply
179
views
What's next after GATK variant calling pipeline?
GATK
pipeline
figures
DNA-seq
updated 4 days ago by
Michael
54k • written 5 days ago by
mgranada3
▴ 30
0
votes
1
reply
160
views
Add line under stat test
stats
R
updated 4 days ago by
Nyksubuz
▴ 20 • written 5 days ago by
Ghada
• 0
0
votes
0
replies
115
views
DOCK6 installation on MacOS M1
installation
troubleshooting
DOCK6
updated 5 days ago by
GenoMax
142k • written 5 days ago by
Rodolfo Adrián
• 0
1
vote
16
replies
762
views
Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NULL > pointer.
blast
ncbi
updated 2 days ago by
GenoMax
142k • written 5 days ago by
hophuquy0944
• 0
0
votes
1
reply
143
views
Wrong ZYGOSITY by ensembl vep on DeepVariant vcf file
annotation
vcf
vep
zygosity
deepvariant
5 days ago by
asalimih
▴ 60
0
votes
0
replies
114
views
Is it okay to assemble my 12 metatranscriptome samples with Trinity separately?
trinity
metatranscriptome
5 days ago by
jway
• 0
0
votes
1
reply
159
views
Seurat v5 and how to correctly integrate across multiple experiments
Seurat
scRNA
R
updated 4 days ago by
Papyrus
★ 2.9k • written 5 days ago by
yura.grabovska
▴ 90
0
votes
1
reply
155
views
Difference in number of reads when using duplex and simplex base calling with Dorado
base
calling
nanopore
simplex
dorado
duplex
updated 4 days ago by
GenoMax
142k • written 5 days ago by
Lélé
▴ 10
0
votes
3
replies
177
views
Problem with Calling Variants from RNA-Seq data
vcf
gatk
benchmark
giab
rna-seq
5 days ago by
Esraa
• 0
0
votes
0
replies
99
views
ReactomeGSA
ReactomeGSA
5 days ago by
Shaimaa Gamal
▴ 10
0
votes
5
replies
293
views
bbmerge (bbmap) ~ error with insert size file output
bbtools
bbmerge
bbmap
updated 5 days ago by
GenoMax
142k • written 5 days ago by
chrisk
• 0
0
votes
1
reply
179
views
perseus software (version 1.5.5)
preseus
mass
spectrometry
data
updated 4 days ago by
DGTool
▴ 20 • written 6 days ago by
iqra
• 0
0
votes
0
replies
104
views
Why the shape of RCS is contradictory to the p value for nonlinearity.
RCS
ggplot2
ggplot
R
updated 6 days ago by
GenoMax
142k • written 6 days ago by
Dude
• 0
0
votes
0
replies
99
views
NEURON, Brian2, NEST, or PyNN
NEST
NEURON
PyNN
Brian2
6 days ago by
brunofelicianodeomena
• 0
0
votes
1
reply
153
views
Polish a large genome with Pilon
Pilon
Pacbio
Polish
Illumina
6 days ago by
sansan_96
▴ 90
1
vote
2
replies
241
views
Why does assigning genes with biomart give me different values than using a transcripts_to_genes.txt file?
biomart
RNAseq
kallisto
4 days ago by
bioinfo
▴ 150
0
votes
2
replies
202
views
Using Cutadapt to trim adapters from paired-end small RNA sequence data
trimming
adapters
cutadapt
sRNA-seq
smallRNA
5 days ago by
melissa.joubert
• 0
0
votes
0
replies
116
views
Is there a real ground truth for CNV data?
CNV
6 days ago by
jennyp0706
• 0
1
vote
1
reply
151
views
sci-RNA-seq
Seurat
sci-RNA-seq
updated 6 days ago by
Ram
43k • written 6 days ago by
kilcdincer
▴ 10
0
votes
3
replies
216
views
How to access GWAVA software of data
GWAVA
updated 6 days ago by
GenoMax
142k • written 6 days ago by
nonaddldy
▴ 10
0
votes
0
replies
98
views
In what situations is 'outer' typically used when using anndata.concat()?
concat
anndata
scanpy
7 days ago by
Spring
• 0
0
votes
2
replies
194
views
Is it necessary to do genotype quality filteration after snp calling with GATK
snp
filteration
genotype
quality
GATK
6 days ago by
IdaHao0921
• 0
0
votes
3
replies
361
views
Snakemake wrapper issue
fastqc
snakemake
updated 7 days ago by
Wei-Chen Pan
• 0 • written 10 weeks ago by
Matvii Mykhailichenko
• 0
0
votes
1
reply
167
views
How to process Bulk WES data?
WES
WGS
updated 7 days ago by
GenoMax
142k • written 7 days ago by
wyuan37
• 0
0
votes
1
reply
165
views
Can diamond prepdb be used to make a taxonomically aware database?
blast
diamond
taxonomy
updated 7 days ago by
GenoMax
142k • written 7 days ago by
cedric.blais
• 0
0
votes
1
reply
153
views
Empty .best and .sing2 Files After Running Demuxlet
Biosciences
Demuxlet
updated 7 days ago by
Ram
43k • written 7 days ago by
eking28
• 0
0
votes
0
replies
108
views
reference-free assembly error assessment tools
assembly
7 days ago by
lagartija
▴ 160
0
votes
4
replies
272
views
Galaxy StringTie error
stringtie
galaxy
6 days ago by
trkfs
• 0
0
votes
0
replies
106
views
dbNSFP sift scores integration
SIFT
VEP
dbNSFP
7 days ago by
atariw
▴ 10
1
vote
4
replies
362
views
Getting the coding_sequence.fasta from the .gff file from the AUGUSTUS gene prediction.
augustus
annotation
assembly
genome
updated 6 days ago by
Juke34
8.6k • written 7 days ago by
Vijith
▴ 30
0
votes
1
reply
168
views
consensus sequence calling
consensus
updated 7 days ago by
bk11
★ 2.5k • written 7 days ago by
Ghada
• 0
0
votes
0
replies
92
views
Empty kernel in SEACells model
single-cell
scanpy
seacells
python
anndata
7 days ago by
JACKY
▴ 140
0
votes
0
replies
107
views
Reference panel of normals for ensembl named refgenome
Mutect2
7 days ago by
gernophil
▴ 80
1
vote
0
replies
101
views
Producing sequence for splicing isoforms
isoform
rMATs
splicing
alternative
SplAdder
7 days ago by
tomas4482
▴ 400
3
votes
2
replies
205
views
Publish a Letter in higher impact vs Research article in lower impact
Article
Letter
Journal
updated 7 days ago by
ATpoint
82k • written 7 days ago by
jennyp0706
• 0
0
votes
0
replies
115
views
lncRNA
tcga
lncrna
8 days ago by
jain72744
▴ 10
1
vote
2
replies
374
views
How to remove multiple batch effects from RNA-seq data before limma differential gene expression analysis?
ComBat-seq
limma
RNA-seq
removeBatchEffect
batch-effect
updated 7 days ago by
Ram
43k • written 8 days ago by
t.fortunato.asquini
• 0
0
votes
2
replies
221
views
Output file of samtools flagstat empty
samtools-flagstat
updated 7 days ago by
colindaven
6.4k • written 8 days ago by
ramendra.sarma
• 0
0
votes
4
replies
410
views
Adata.raw.X in LIANA, something wrong with conversion from Seurat to adata in python.
k
7 days ago by
beginner123
• 0
0
votes
2
replies
236
views
java.nio.bufferunderflowexception haplotypecaller error for bqsr reads
deducplicated
java.nio.bufferunderflowexception
haplotypecaller
bqsr
7 days ago by
analyst
▴ 50
0
votes
1
reply
209
views
extract viral protein of interest from 10k whole viral genomes
nBLAST
viral-genome
updated 10 days ago by
Ram
43k • written 10 days ago by
Shwetha
• 0
0
votes
0
replies
170
views
Marker Features variance by cluster, sample, and treatment group
Seurat
scATAC-seq
ArchR
updated 10 days ago by
Ram
43k • written 10 days ago by
naomiboldon
• 0
1
vote
3
replies
312
views
How to format "I" and "D" in vcf version 4.2 for liftover analysis in GATK
gatk
vcf
liftover
updated 10 days ago by
Ram
43k • written 10 days ago by
Omics data mining
▴ 260
0
votes
5
replies
352
views
Too many unpaired forward reads found by Trimmomatic
Trimmomatic
7 days ago by
SilhouetteQ
• 0
0
votes
1
reply
211
views
Alignment of samples with spike-in
alignment
multimapping
RNA-seq
ChIP-seq
spike-in
updated 10 days ago by
GenoMax
142k • written 10 days ago by
maria.soler
• 0
0
votes
2
replies
305
views
How are score_weights calculated in this code?
single-cell
9 days ago by
carolofharvest
▴ 40
0
votes
1
reply
234
views
How to convert Haps file to vcf file?
pre-phasing
GWAS
imputation
updated 10 days ago by
curious
▴ 750 • written 10 days ago by
SeoGyun
• 0
0
votes
0
replies
161
views
Trouble converting tfam and tped to map and ped files
plink
ped
tfam
tped
map
10 days ago by
Samantha
• 0
0
votes
1
reply
203
views
Microbial Signal Transduction Database
MiST
updated 10 days ago by
zx8754
11k • written 11 days ago by
Shravani
• 0
0
votes
0
replies
150
views
Allele specific expression of imprinted gens from 10x scRNA-seq data
scrna-seq
imprinted
10x
genes
11 days ago by
singcell
• 0
1,000 results • Page
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Comment: how to treat the replicates while performing WGCNA
by
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▴ 10
Hello I have a quick question, I did as you said , and further added the traits, found the correlation among the modules and the traits us…
Comment: Elbow plot question (scRNA seq data analysis - scanpy tutorial)
by
ojaswinipandey
• 0
Thank you so much Dave.
Answer: Elbow plot question (scRNA seq data analysis - scanpy tutorial)
by
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★ 1.7k
The y axis represents the proportion of the total variance explained by each principal component. It's negative because the value (between…
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Please do a few simple Google searches before asking others for help.
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This post does not fit the theme of this forum.
Comment: ICGEB - SLIBTEC NGS Workshop: Won Best Oral Presentation Award
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Hi, Congratulations but this is not LinkedIn, we are not a place to showcase your professional accomplishments. This does not fall under t…
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Many (most?) programs related to NGS data analysis produce non-deterministic output (unless they explicitly offer an option to produce dete…
Comment: How to find SRA sequences of some fungal whole genome sequences if only Biosampl
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142k
For those samples it appears that raw data was not submitted. Just an assembly. $ esearch -db biosample -query SAMN08009548 | elink -…
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Great, thank you!
Comment: Filter Genome for Specific Sites
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This is unhelpful and doesn't answer my question.
Comment: How to find SRA sequences of some fungal whole genome sequences if only Biosampl
by
Harshita
• 0
It seems that the authors in this paper have used paired-end sequences only for their analysis, and for that, they would also have used the…
Comment: How to find SRA sequences of some fungal whole genome sequences if only Biosampl
by
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• 0
Thank you so much for helping me out in this! I have used most of the sequences that are found in this table. But, some samples like the…
Answer: How to find SRA sequences of some fungal whole genome sequences if only Biosampl
by
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142k
Looks like the samples are from this project: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA320483&o=acc_s%3Aa This table has the SR…
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