Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
1,000 results • Page
2 of 20
Sort: Votes
Rank
Views
Votes
Replies
13
votes
9
replies
2.7k
views
7 follow
News:
Inviting NEW Biostars moderators to join Biostars slack channel
slack
moderator
7 months ago by
GenoMax
142k
13
votes
7
replies
5.8k
views
News:
Free HiSeq X Ten human genome fastq test data
HiSeq-X-Ten
Human-genome
Fastq
next-gen
updated 2.4 years ago by
Ram
43k • written 9.8 years ago by
rbagnall
★ 1.8k
13
votes
8
replies
2.7k
views
News:
NCBI is going to eliminate GI identifiers
ncbi
GI
updated 13 months ago by
Ram
43k • written 8.2 years ago by
Anima Mundi
★ 2.9k
13
votes
2
replies
1.5k
views
News:
Thank you Biostars!
meta
updated 11 months ago by
Ram
43k • written 5.0 years ago by
Glory Basumata
▴ 140
12
votes
3
replies
2.5k
views
News:
Google Summer of Code and Open Bioinformatics Foundation is looking for students
GSoC
open-source
updated 13 months ago by
Ram
43k • written 8.2 years ago by
Philipp Bayer
8.5k
12
votes
2
replies
518
views
News:
8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024) - already half booked
Workshop
RNA-Seq
DNA-Seq
Illumina
5 weeks ago by
David Langenberger
11k
12
votes
2
replies
1.5k
views
News:
Free online Ensembl course, now with a fixed sign-up link
ensembl
course
training
updated 13 months ago by
Ram
43k • written 7.2 years ago by
Emily
23k
12
votes
7
replies
3.9k
views
News:
Welcome Ensembl REST with more endpoints!
ensembl
rest-api
updated 14 months ago by
Ram
43k • written 9.6 years ago by
Denise CS
★ 5.2k
12
votes
17
replies
4.2k
views
6 follow
News:
A programming language for living cells [Cello]
dna
sequence
research
language
updated 13 months ago by
Ram
43k • written 8.1 years ago by
Sukhi Singh
11k
12
votes
0
replies
3.3k
views
News:
Looking For Feedback On The Json Output For Ncbi E-Utilities
ncbi
eutils
updated 15 months ago by
Ram
43k • written 11.5 years ago by
Chris Maloney
▴ 360
12
votes
8
replies
7.2k
views
News:
rRNA Depletion / Poly-A Selection Responsible for RNA-seq Bias
rRNA-depletion
RNA-seq-bias
updated 14 months ago by
Ram
43k • written 9.9 years ago by
support
▴ 650
12
votes
8
replies
3.5k
views
News:
'Potential Rna-Dna Binding Site In Alu Repeat', Or 'Why Should I Allow Multiple Mapping Positions When Analyzing Chipseq Data?'
chipseq
rna
updated 14 months ago by
Ram
43k • written 10.9 years ago by
David Langenberger
11k
12
votes
4
replies
2.1k
views
News:
#NGSchool2018 summer school in bioinformatics
NGSchool
Personalised-Medicine
Nanopore
updated 12 months ago by
Ram
43k • written 6.0 years ago by
kzkedzierska
▴ 290
11
votes
11
replies
1.8k
views
8 follow
News:
Python Data Visualization Course. Last 3 spots left
next-gen
updated 11 months ago by
Ram
43k • written 5.5 years ago by
carlopecoraro2
★ 2.5k
11
votes
13
replies
3.2k
views
News:
Ensembl datacentre shut-down: Friday 26th August - Tuesday 30th August 2016
Maintenance
Ensembl
updated 13 months ago by
Ram
43k • written 7.7 years ago by
Ben_Ensembl
★ 2.4k
11
votes
25
replies
6.3k
views
15 follow
News:
Questions for the NCBI Next Generation Sequencing Online Workshop Can be Posted with the NCBI_NOW Tag
NCBI_NOW
updated 13 months ago by
Ram
43k • written 8.6 years ago by
DCGenomics
▴ 330
11
votes
1
reply
4.2k
views
News:
GATB will provide developer support via Biostar
minia
dsk
gatb
updated 2.3 years ago by
Ram
43k • written 10.0 years ago by
Rayan Chikhi
★ 1.5k
11
votes
0
replies
3.3k
views
News:
BWA 0.7.11 is out, supports ALT contigs
BWA
updated 14 months ago by
Ram
43k • written 9.4 years ago by
Devon Ryan
104k
11
votes
2
replies
2.4k
views
News:
Ensembl 76 is out
Genome-browser
Ensembl
updated 2.4 years ago by
Ram
43k • written 9.8 years ago by
Emily
23k
11
votes
2
replies
1.5k
views
News:
ASA discusses limitations of p-values what are the alternatives?
statistics
p-value
updated 13 months ago by
Ram
43k • written 8.2 years ago by
dariober
14k
11
votes
1
reply
2.1k
views
News:
Upcoming Hands-On Workshop: De Novo Transcriptome Assembly and Analysis
Workshop
Assembly
RNA-Seq
updated 13 months ago by
Ram
43k • written 8.0 years ago by
David Langenberger
11k
11
votes
1
reply
2.9k
views
News:
NGS Data Analysis Workshop for Beginners in Munich (full)
RNA-Seq
training
NGS
workshop
updated 22 months ago by
Ram
43k • written 7.8 years ago by
David Langenberger
11k
11
votes
2
replies
3.7k
views
News:
Coursera: Computational Molecular Evolution
course
updated 14 months ago by
Ram
43k • written 11.0 years ago by
Pierre Lindenbaum
161k
11
votes
9
replies
7.8k
views
News:
NovaSeq quality analysis
sequencing
updated 12 months ago by
Ram
43k • written 6.9 years ago by
Brian Bushnell
20k
10
votes
4
replies
1.3k
views
News:
RNA-Seq Data Analysis Workshop - Join us in Berlin, Germany from March 27-30, 2023!
NGS
transcriptomics
workshop
updated 14 months ago by
kng
▴ 30 • written 15 months ago by
David Langenberger
11k
10
votes
4
replies
1.8k
views
News:
3rd Berlin Summer School in NGS Data Analysis (2 seats just became available)
NGS
RNA-Seq
DNA-Seq
updated 11 months ago by
Ram
43k • written 5.3 years ago by
David Langenberger
11k
10
votes
4
replies
2.7k
views
News:
Ensembl 77 is out
ensembl
updated 2.3 years ago by
Ram
43k • written 9.6 years ago by
Emily
23k
10
votes
4
replies
1.0k
views
News:
Good morning
good
morning
updated 20 months ago by
Istvan Albert
100k • written 20 months ago by
Kevin Blighe
88k
10
votes
7
replies
2.9k
views
News:
Linux for Biologists e-book (free to read online)
linux
python
galaxy
conda
virtual-machine
2.6 years ago by
vimalkvn
▴ 320
10
votes
0
replies
2.1k
views
News:
Pan-Cancer Analysis of RNA Binding Proteins in ~7000 tumor samples
Pan-Cancer
mutations
TCGA
RNA-seq
cancer-driver
updated 12 months ago by
Ram
43k • written 6.3 years ago by
lsp03yjh
▴ 860
10
votes
1
reply
2.0k
views
News:
Run on 1st Berlin Summer School in NGS Data Analysis
DNA-Seq
RNA-Seq
NGS
updated 13 months ago by
Ram
43k • written 7.3 years ago by
David Langenberger
11k
10
votes
17
replies
3.4k
views
7 follow
News:
Tell us what you think of the ENA browser?
ena
updated 13 months ago by
Ram
43k • written 7.5 years ago by
Laura
★ 1.8k
10
votes
2
replies
3.3k
views
News:
Biostars based Q&A for Bioconductor: http://support.bioconductor.org
RNA-Seq
bioconductor
updated 2.4 years ago by
Ram
43k • written 9.7 years ago by
Pierre Lindenbaum
161k
10
votes
0
replies
3.4k
views
News:
1000 Genomes data on GRCh38
1000Genomes
GRCh38
alts
alignment
updated 20 months ago by
Ram
43k • written 8.6 years ago by
fairley
▴ 100
10
votes
0
replies
2.9k
views
News:
Cfp: Camda 2013 Challenge: Big Data In Life Sciences
ngs
conference
updated 15 months ago by
Ram
43k • written 11.2 years ago by
okko.clevert
▴ 240
10
votes
7
replies
2.4k
views
News:
Free draft copy of book on bioinformatics tools
alignment
Assembly
RNA-seq
next-gen
updated 16 months ago by
Ram
43k • written 9.0 years ago by
ugly.betty77
★ 1.1k
10
votes
1
reply
3.1k
views
News:
Ucsc: Dna Sequences In Web Pages Indexed By Bing.Com / Microsoft Research (All Phenotype And Literature Tracks)
web
ucsc
updated 14 months ago by
Ram
43k • written 10.3 years ago by
Pierre Lindenbaum
161k
9
votes
6
replies
2.2k
views
News:
No more hidden solutions in bioinformatics
precision-medicine
genome-sequencing
updated 16 months ago by
Ram
43k • written 9.0 years ago by
HG
★ 1.2k
9
votes
5
replies
10k
views
8 follow
News:
Online course: Learn Bioinformatics in 100 hours
biostars
online-course
updated 15 months ago by
Ram
43k • written 6.7 years ago by
Istvan Albert
100k
9
votes
0
replies
2.2k
views
News:
Commercial advertising on Biostars
meta
biostars
advertising
updated 14 months ago by
Ram
43k • written 9.6 years ago by
Istvan Albert
100k
9
votes
4
replies
2.5k
views
7 follow
News:
fastp 0.22 released, with new FASTQ deduplication feature.
fastp
updated 9 months ago by
Ram
43k • written 2.7 years ago by
chen
★ 2.5k
9
votes
2
replies
14k
views
News:
Bio-Linux 8 is now available
genome
rna-seq
alignment
Assembly
next-gen
updated 2.4 years ago by
Ram
43k • written 9.8 years ago by
rtliu
★ 2.2k
9
votes
4
replies
3.7k
views
News:
Conference Announcement - Camda 2013
conference
classification
updated 15 months ago by
Ram
43k • written 11.4 years ago by
okko.clevert
▴ 240
9
votes
5
replies
3.1k
views
News:
The NIH Software Discovery Index | We invite your comments
NIH
software-catalog
updated 2.3 years ago by
Ram
43k • written 9.6 years ago by
Sean Davis
26k
9
votes
5
replies
3.7k
views
News:
SAMTOOLS 1.4 released
samtools
updated 12 months ago by
Ram
43k • written 7.2 years ago by
Pierre Lindenbaum
161k
9
votes
5
replies
8.8k
views
News:
A New Rest Based Api For Kegg: Kyoto Encyclopedia Of Genes And Genomes
kegg
api
updated 15 months ago by
Ram
43k • written 11.5 years ago by
wchknudt
▴ 50
9
votes
3
replies
4.8k
views
News:
Bioinformatics Contest 2020. Call for problems
contest
updated 11 months ago by
Ram
43k • written 4.7 years ago by
alserg
▴ 930
9
votes
4
replies
1.6k
views
News:
Human Cell Atlas Data Coordination Platform Data Release Questionaire
RNA-Seq
updated 12 months ago by
Ram
43k • written 6.2 years ago by
Laura
★ 1.8k
9
votes
3
replies
3.3k
views
News:
New Human Genome Assembly (Grch38) Released
human-genome
assembly
updated 14 months ago by
Ram
43k • written 10.4 years ago by
Pierre Lindenbaum
161k
8
votes
0
replies
2.2k
views
News:
A Call To Create Listings Of The Best Review Papers
papers
updated 15 months ago by
Ram
43k • written 11.7 years ago by
Istvan Albert
100k
1,000 results • Page
2 of 20
Recent Votes
plotting trees in R: node labels from nexus tree files
Interpreting the Jackstraw plot of Seurat
A: How is the design in DESeq2 work?
Error in CIBERSORTx ($ operator is invalid for atomic vectors)
Answer: RNAseq coverage vs depth for transcript isoform expression?
constructing pangenome through psvcp
Differential Expression with limma: Contrast and Design Matrix, combinatorial approach valid?
Recent Locations •
All
Spain,
just now
South Korea,
1 minute ago
Spain,
2 minutes ago
United States,
4 minutes ago
South Korea,
4 minutes ago
The Netherlands,
10 minutes ago
United Kingdom,
11 minutes ago
Recent Awards •
All
Popular Question
to
carlopecoraro2
★ 2.5k
Popular Question
to
scideas
▴ 30
Popular Question
to
Muhammad
• 0
Popular Question
to
synat.keam
▴ 100
Scholar
to
jv
★ 1.8k
Popular Question
to
syedahamdani94
• 0
Popular Question
to
mohammadhassanj
▴ 260
Recent Replies
Answer: Design for complex RNA-Seq experiment using Deseq2
by
Ezequiel
• 0
I completely agree with most points. The PCA shows that the biggest driver of difference is the patients themselves, with PRE and POST time…
Comment: Add stats to the plot
by
marco.barr
▴ 130
Hi, you can add statistical annotations using `ggpubr` function `stat_pvalue_manual `. You need to make sure you calculate the p-values fir…
Answer: seqtk subseq in.fastq list.txt > out.fastq not extracting full sequence from
by
ATpoint
82k
Use everything before the whitespace in list.txt, for example `A00869:294:HCW57DSXY:2:1101:3929:1000` and not `A00869:294:HCW57DSXY:2:1101:…
Answer: CellRanger output more cells than specified using --force-cells? Why?
by
scideas
▴ 30
I actually had this same issue with CellRanger v7- turns out that since you have 2 species in your mapping reference, CellRanger is forcing…
Answer: Checking chromosome builds for genotyping data
by
Muhammad
• 0
Assume you have genotype data in Plink format. (G.bed, G.bim, G.fam) Download some reference panel data in Plink format (R.bed, R.bim, R.f…
Comment: Error in CIBERSORTx ($ operator is invalid for atomic vectors)
by
nguyenn6
• 0
did you ever figure it out? i'm having the same issue.
Comment: Traveler with Infernal mapping failed
by
anton.i.petrov
• 0
Hi Larissa! I am the lead developer of R2DT and I've just noticed this question. Could you please email help@r2dt.bio with your input seque…
Comment: constructing pangenome through psvcp
by
analyst
▴ 50
Fixed the issue by updating nucmer version.
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
GenoMax
142k
Can you create a small test database (`makeblastdb`) from your query file and try to run the search against the same file and see if that w…
Comment: calculating genomic coverage/ base overlap in R
by
1769mkc
★ 1.2k
you can `dput(head(df)` for the both the data frame so that other can test for possible solutions
Comment: Broad and Narrow peaks
by
ATpoint
82k
What is your question? It's unclear.
Comment: Help with Biopython for Beginner
by
Joe
21k
One question before offering more solutions: are you trying to learn Python with this as an example problem, or are you trying to find the …
Answer: RNAseq coverage vs depth for transcript isoform expression?
by
Gordon Smyth
★ 7.2k
See the exploration of isoform estimation precision vs read length and sequencing depth in our paper: https://doi.org/10.1093/nar/gkad1167.…
Comment: How to handle duplicated genes in TCGA data?
by
txema.heredia
▴ 130
Why does the tool require gene symbols and not ensembl ids? Is it retrieving information from somewhere else? If so, your best bet is to fi…
Comment: how to treat the replicates while performing WGCNA
by
mavy
▴ 10
Thank you so much for your response . Really appreciate it. I will try the way you mentioned and will get back if I have any query
Traffic: 1418 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6