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News: Beyond pest control: What can we learn from parasites?
docking heme parasitism in-silico
updated 11 months ago by 43k • written 5.2 years ago by 54k
12
votes
7
replies
3.9k
views
News: Welcome Ensembl REST with more endpoints!
ensembl rest-api
updated 14 months ago by 43k • written 9.6 years ago by ★ 5.2k
17
votes
7
replies
9.1k
views
News: Upcoming NGS Workshop: A Beginner's Guide to NGS Data Analysis
workshop Assembly transcriptomics RNA-Seq
updated 2.2 years ago by 43k • written 9.5 years ago by 11k
21
votes
7
replies
7.8k
views
News: Survey: Rna-Seq Analysis For Differential Gene/Transcript Expression [Updated With Results]
transcript RNA-seq gene
updated 14 months ago by 43k • written 11.5 years ago by ▴ 250
10
votes
7
replies
2.9k
views
News: Linux for Biologists e-book (free to read online)
linux python galaxy conda virtual-machine
2.6 years ago by vimalkvn ▴ 320
25
votes
7
replies
2.8k
views
6 follow
News: Who qualifies to be a bioinformatician?
resume bioinformatician vc
updated 22 months ago by 43k • written 9.1 years ago by 161k
6
votes
7
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5.4k
views
News: Illumina Nextseq 500 And Hiseq X Ten: Newer Tech Lowering Cost Per Mbp
Illumina
updated 14 months ago by 43k • written 10.3 years ago by ▴ 650
9
votes
6
replies
2.2k
views
News: No more hidden solutions in bioinformatics
precision-medicine genome-sequencing
updated 16 months ago by 43k • written 9.0 years ago by ★ 1.2k
14
votes
6
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7.1k
views
News: FINAL CALL: NGS Workshop - A Beginner's Guide to NGS Data Analysis (2 last seats)
NGS RNA-Seq workshop
updated 17 months ago by 43k • written 8.9 years ago by 11k
8
votes
6
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4.0k
views
News: Last Call: Upcoming Workshop - Rna-Seq Bioinformatics: A Practical Introduction
RNA-seq
updated 14 months ago by 43k • written 11.3 years ago by 11k
2
votes
6
replies
2.9k
views
News: Master in integrated systems biology / Luxembourg
systems-biology Masters-course
updated 12 months ago by 43k • written 6.8 years ago by ▴ 130
3
votes
6
replies
2.7k
views
News: Brief Getting Started with Broad Firecloud tutorial posted
RNA-Seq
updated 13 months ago by 43k • written 7.9 years ago by 26k
1
vote
6
replies
1.2k
views
News: Course - FLOW CYTOMETRY ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor FlowCytometry R
updated 16 months ago by ▴ 100 • written 17 months ago by ★ 2.5k
32
votes
6
replies
13k
views
7 follow
News: Ncbi Releases Entrez Direct, The Entrez Utilities On The Unix Command Line
ncbi genbank pubmed command-line entrez
updated 14 months ago by 43k • written 10.3 years ago by 161k
17
votes
6
replies
9.0k
views
News: Final registration deadline: September 15th - Bioinformatics Hands-On NGS Data Analysis Workshops 2014
methylation RNA-seq
updated 14 months ago by 43k • written 10.1 years ago by 11k
8
votes
6
replies
1.5k
views
News: Illumina to Acquire Pacific Biosciences
pacbio illumina
updated 11 months ago by 43k • written 5.5 years ago by 100k
8
votes
6
replies
17k
views
News: Bioinformatics PhD Programs in the US
education PhD
updated 12 months ago by 43k • written 6.5 years ago by ▴ 70
3
votes
5
replies
2.3k
views
News: (18 August - "Enzyme Stability Prediction") A free webinar on on-going CAFA5 (Critical Assessment of Functional Annotation of proteins) challenge
gene-ontology CAFA protein
9 months ago by Alexander ▴ 220
4
votes
5
replies
2.8k
views
News: Kover will provide support via Biostars
kmer kover machine-learning
updated 13 months ago by 43k • written 8.0 years ago by ▴ 90
3
votes
5
replies
2.3k
views
News: Published: GeneSCF: a real-time based functional enrichment tool with support for multiple organisms
kegg gene-enrichment cancer gene-ontology
updated 13 months ago by 43k • written 7.7 years ago by 7.5k
9
votes
5
replies
10k
views
8 follow
News: Online course: Learn Bioinformatics in 100 hours
biostars online-course
updated 15 months ago by 43k • written 6.7 years ago by 100k
1
vote
5
replies
1.2k
views
News: Cancer Genomics course - 2 seats left
Genomics Cancer-Genomics R
updated 15 months ago by 43k • written 16 months ago by ★ 2.5k
9
votes
5
replies
3.7k
views
News: SAMTOOLS 1.4 released
samtools
updated 12 months ago by 43k • written 7.2 years ago by 161k
0
votes
5
replies
2.6k
views
News: Workshop: Data manipulation and visualization with Python
next-gen genome SNP sequence
updated 13 months ago by 43k • written 7.5 years ago by ★ 2.5k
6
votes
5
replies
5.3k
views
News: NCBI MagicBlast ( Short read mapper )
blast ncbi short-read mapper hts
updated 13 months ago by 43k • written 7.7 years ago by 161k
7
votes
5
replies
2.6k
views
News: Physalia-Course: Introduction to Linux and workflows for biologists (Berlin)
next-gen Unix Assembly alignment
updated 12 months ago by 43k • written 7.2 years ago by ★ 2.5k
9
votes
5
replies
3.1k
views
News: The NIH Software Discovery Index | We invite your comments
NIH software-catalog
updated 2.3 years ago by 43k • written 9.6 years ago by 26k
3
votes
5
replies
1.3k
views
News: Ensembl Release 104 and newer GTF files no longer have genes sorted by position
Ensembl GTF
updated 8 months ago by ▴ 120 • written 18 months ago by ▴ 30
0
votes
5
replies
1.6k
views
News: LAST CALL - 'Introduction to NGS Data Analysis' course in Berlin, October 8-10 2018
NGS training RNA-Seq DNA-Seq
updated 11 months ago by 43k • written 5.9 years ago by 11k
0
votes
5
replies
2.0k
views
News: Ashg 2012 Biostar Meetup
ASHG
updated 14 months ago by 43k • written 11.5 years ago by 12k
9
votes
5
replies
8.8k
views
News: A New Rest Based Api For Kegg: Kyoto Encyclopedia Of Genes And Genomes
kegg api
updated 14 months ago by 43k • written 11.5 years ago by ▴ 50
33
votes
5
replies
3.8k
views
News: FINAL CALL: Epigenetics Workshop - DNA Methylation Data Analysis (some last seats available)
Epigenetics Workshop Bisulfite-Sequencing
updated 13 months ago by 43k • written 8.0 years ago by ▴ 460
14
votes
5
replies
3.4k
views
News: Science Article On Social Influence Bias On Voting Patterns ("Herding") With Impact On Biostar.
meta biostars
updated 15 months ago by 43k • written 10.8 years ago by 54k
5
votes
4
replies
1.9k
views
News: 2nd International Conference on Pediatric Oncology and Pediatric Medicine
gene
updated 13 months ago by 43k • written 7.2 years ago by • 0
6
votes
4
replies
1.7k
views
News: Genomic variation course at the EBI - Updated
Ensembl 1000Genomes snps variation
updated 13 months ago by 43k • written 8.2 years ago by 23k
10
votes
4
replies
2.7k
views
News: Ensembl 77 is out
ensembl
updated 2.3 years ago by 43k • written 9.6 years ago by 23k
10
votes
4
replies
1.3k
views
News: RNA-Seq Data Analysis Workshop - Join us in Berlin, Germany from March 27-30, 2023!
NGS transcriptomics workshop
updated 14 months ago by ▴ 30 • written 15 months ago by 11k
1
vote
4
replies
1.8k
views
News: Bioconductor Development Visualization
bioconductor
updated 22 months ago by 43k • written 9.1 years ago by 26k
2
votes
4
replies
1.2k
views
News: Course ONLINE - RNAseq data analysis with R and Bioconductor (15-19 June)
R RNA-seq Bioconductor
updated 11 months ago by 43k • written 4.0 years ago by ★ 2.5k
14
votes
4
replies
3.4k
views
News: FULL: NGS Data Analysis Workshop for Beginners in Munich (29 June - 1 Juli 2016)
RNA-Seq next-gen NGS
updated 22 months ago by 43k • written 8.3 years ago by 11k
15
votes
4
replies
4.7k
views
News: Workshop: Genomic Data Visualization and Interpretation (Berlin, Germany)
dataviz GenVisR next-gen R
updated 13 months ago by 43k • written 7.2 years ago by ★ 2.5k
0
votes
4
replies
1.9k
views
News: What NGS courses would you like us to prepare for 2016? (one week left)
NGS Survey Workshop
updated 21 months ago by 43k • written 8.4 years ago by 11k
1
vote
4
replies
1.5k
views
News: Spring School for RNA-seq Sequence Analysis
RNA-Seq genome sequence sequencing
updated 13 months ago by 43k • written 7.3 years ago by ▴ 10
1
vote
4
replies
2.0k
views
News: webserver of TCGA data www.tcgaportal.org
genome RNA-Seq TCGA gene
updated 11 months ago by 43k • written 6.0 years ago by ▴ 40
9
votes
4
replies
1.6k
views
News: Human Cell Atlas Data Coordination Platform Data Release Questionaire
RNA-Seq
updated 12 months ago by 43k • written 6.2 years ago by ★ 1.8k
7
votes
4
replies
2.7k
views
News: Boston Ma Us Area Folks: Software Carpentry Workshop For Women In Science Coming Up
python training
updated 14 months ago by 43k • written 11.1 years ago by 11k
4
votes
4
replies
1.9k
views
News: 12th International Conference on Advancements in Bioinformatics and Drug Discovery
genome Computational-Biology
updated 12 months ago by 43k • written 6.0 years ago by ▴ 20
2
votes
4
replies
1.5k
views
News: Online training - Snakemake: Reproducible and Scalable Bioinformatic Workflows
Snakemake Pipeline
2.5 years ago by carlopecoraro2 ★ 2.5k
33
votes
4
replies
6.8k
views
News: Rosalind: A Novel Bioinformatics Education Platform
education
updated 14 months ago by 43k • written 11.6 years ago by ▴ 330
3
votes
4
replies
2.1k
views
News: OmicCircos was updated
R OmicCircos
updated 24 months ago by 43k • written 9.2 years ago by ▴ 50
1,000 results • Page 2 of 20
Recent Votes
Answer: In one PCA plot, can I calculate the percentage of different factors that contri
Answer: Details on salmon index
Answer: Generating consensus sequence from bam file
Answer: Short Read Data Genome Assembly
Comment: API kegg - IndexError: list index out of range
Comment: How does FindNeighbors() and FindClusters() related and work?
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
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Comment: In one PCA plot, can I calculate the percentage of different factors that contri by diqixiaoyaoer ▴ 10
You can have a look on my answer. I have post it below.
Answer: In one PCA plot, can I calculate the percentage of different factors that contri by diqixiaoyaoer ▴ 10
Here is my script that can be used to calculate how much degree that different factors contribute to PCA variance (PC1 and PC2). # …
Comment: Details on salmon index by Lorenzo • 0
Thank you so much for the beautiful explanation. Just one more curiosity. So in the first versions Salmon utilized RapMap to index and then…
Comment: What marks a De-Novo Genome assembly as FAILED? by dthorbur ★ 2.0k
I'm a little confused about your experimental design. Are you making 45 different assemblies? Or are all the samples from the same individu…
Comment: zero TPM for many gene including housekeeping when using kallisto by ATpoint 82k
You should be stating how you constructed the index, and include the actual lines for the problematic genes from the abundance files. Note …
Comment: zero TPM for many gene including housekeeping when using kallisto by dariober 14k
You could try [salmon](https://combine-lab.github.io/salmon/getting_started/) to see if the problem is with kallisto or with the pseudo-ali…
Comment: solution-Transcriptome.cpp:18:Transcriptome: exiting because of *INPUT FILE* err by GenoMax 142k
> INPUT FILE error: could not open input file /geneInfo.tab Based on the error it appears that the input file you are providing could not …
Answer: How to handle duplicated genes in TCGA data? by txema.heredia ▴ 130
Having duplicate gene symbols is pretty common. Why do you need to work with gene symbols? To compare them to external datasets? Or just fo…
Comment: Merge clusters in Seurat UMAP by kilcdincer ▴ 10
It did not help either. But I got the answer [here][1] Thank you! [1]: https://github.com/satijalab/seurat/issues/8902
Comment: How to generate table_annovar from VCF input? by Pierre Lindenbaum 161k
there is no `--allsample` option in the "usage" screen you're showing. I suspect you're using an old version ?
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i by egascon • 0
Thank you very much again. I have learned a lot of things.
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i by egascon • 0
It's a microarryay experiment, not RNASeq
Comment: Sam file Header problem by Pierre Lindenbaum 161k
https://gatk.broadinstitute.org/hc/en-us/articles/360035890671-Read-groups
Answer: Faster Needleman-Wunsch rapid global alignment of two sequences? by DGTool ▴ 20
I have also recently come across another global alignment algorithm that was recently released which could seem pretty interesting to test …
Comment: Faster Needleman-Wunsch rapid global alignment of two sequences? by b.contreras.moreira ▴ 190
Not sure, you might ask in the repo, please share here the response if you find it
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