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1,000 results • Page
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Sort: Votes
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Votes
Replies
13
votes
7
replies
5.9k
views
News:
Free HiSeq X Ten human genome fastq test data
HiSeq-X-Ten
Human-genome
Fastq
next-gen
updated 2.5 years ago by
Ram
44k • written 9.8 years ago by
rbagnall
★ 1.8k
13
votes
2
replies
1.6k
views
News:
Thank you Biostars!
meta
updated 11 months ago by
Ram
44k • written 5.0 years ago by
Glory Basumata
▴ 140
13
votes
8
replies
2.7k
views
News:
NCBI is going to eliminate GI identifiers
ncbi
GI
updated 13 months ago by
Ram
44k • written 8.2 years ago by
Anima Mundi
★ 2.9k
13
votes
2
replies
3.1k
views
News:
A Summary Of All Encode Related News On The Openhelix Blog: Encode Floods The News
encode
updated 15 months ago by
Ram
44k • written 11.7 years ago by
Istvan Albert
100k
12
votes
2
replies
1.5k
views
News:
Free online Ensembl course, now with a fixed sign-up link
ensembl
course
training
updated 13 months ago by
Ram
44k • written 7.3 years ago by
Emily
23k
12
votes
8
replies
7.2k
views
News:
rRNA Depletion / Poly-A Selection Responsible for RNA-seq Bias
rRNA-depletion
RNA-seq-bias
updated 14 months ago by
Ram
44k • written 9.9 years ago by
support
▴ 650
12
votes
3
replies
2.5k
views
News:
Google Summer of Code and Open Bioinformatics Foundation is looking for students
GSoC
open-source
updated 13 months ago by
Ram
44k • written 8.2 years ago by
Philipp Bayer
8.5k
12
votes
17
replies
4.2k
views
6 follow
News:
A programming language for living cells [Cello]
dna
sequence
research
language
updated 13 months ago by
Ram
44k • written 8.1 years ago by
Sukhi Singh
11k
12
votes
0
replies
3.3k
views
News:
Looking For Feedback On The Json Output For Ncbi E-Utilities
ncbi
eutils
updated 15 months ago by
Ram
44k • written 11.5 years ago by
Chris Maloney
▴ 360
12
votes
4
replies
2.1k
views
News:
#NGSchool2018 summer school in bioinformatics
NGSchool
Personalised-Medicine
Nanopore
updated 12 months ago by
Ram
44k • written 6.0 years ago by
kzkedzierska
▴ 290
12
votes
2
replies
531
views
News:
8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024) - already half booked
Workshop
RNA-Seq
DNA-Seq
Illumina
6 weeks ago by
David Langenberger
11k
12
votes
8
replies
3.5k
views
News:
'Potential Rna-Dna Binding Site In Alu Repeat', Or 'Why Should I Allow Multiple Mapping Positions When Analyzing Chipseq Data?'
chipseq
rna
updated 15 months ago by
Ram
44k • written 10.9 years ago by
David Langenberger
11k
12
votes
7
replies
3.9k
views
News:
Welcome Ensembl REST with more endpoints!
ensembl
rest-api
updated 14 months ago by
Ram
44k • written 9.6 years ago by
Denise CS
★ 5.2k
11
votes
0
replies
3.3k
views
News:
BWA 0.7.11 is out, supports ALT contigs
BWA
updated 14 months ago by
Ram
44k • written 9.4 years ago by
Devon Ryan
104k
11
votes
2
replies
2.4k
views
News:
Ensembl 76 is out
Genome-browser
Ensembl
updated 2.4 years ago by
Ram
44k • written 9.8 years ago by
Emily
23k
11
votes
11
replies
1.8k
views
8 follow
News:
Python Data Visualization Course. Last 3 spots left
next-gen
updated 12 months ago by
Ram
44k • written 5.5 years ago by
carlopecoraro2
★ 2.5k
11
votes
1
reply
2.9k
views
News:
NGS Data Analysis Workshop for Beginners in Munich (full)
RNA-Seq
training
NGS
workshop
updated 22 months ago by
Ram
44k • written 7.8 years ago by
David Langenberger
11k
11
votes
9
replies
7.8k
views
News:
NovaSeq quality analysis
sequencing
updated 12 months ago by
Ram
44k • written 6.9 years ago by
Brian Bushnell
20k
11
votes
13
replies
3.2k
views
News:
Ensembl datacentre shut-down: Friday 26th August - Tuesday 30th August 2016
Maintenance
Ensembl
updated 13 months ago by
Ram
44k • written 7.7 years ago by
Ben_Ensembl
★ 2.4k
11
votes
25
replies
6.3k
views
15 follow
News:
Questions for the NCBI Next Generation Sequencing Online Workshop Can be Posted with the NCBI_NOW Tag
NCBI_NOW
updated 14 months ago by
Ram
44k • written 8.7 years ago by
DCGenomics
▴ 330
11
votes
1
reply
2.1k
views
News:
Upcoming Hands-On Workshop: De Novo Transcriptome Assembly and Analysis
Workshop
Assembly
RNA-Seq
updated 13 months ago by
Ram
44k • written 8.0 years ago by
David Langenberger
11k
11
votes
1
reply
4.2k
views
News:
GATB will provide developer support via Biostar
minia
dsk
gatb
updated 2.3 years ago by
Ram
44k • written 10.0 years ago by
Rayan Chikhi
★ 1.5k
11
votes
2
replies
3.7k
views
News:
Coursera: Computational Molecular Evolution
course
updated 15 months ago by
Ram
44k • written 11.0 years ago by
Pierre Lindenbaum
162k
11
votes
2
replies
1.5k
views
News:
ASA discusses limitations of p-values what are the alternatives?
statistics
p-value
updated 13 months ago by
Ram
44k • written 8.2 years ago by
dariober
14k
10
votes
17
replies
3.4k
views
7 follow
News:
Tell us what you think of the ENA browser?
ena
updated 13 months ago by
Ram
44k • written 7.5 years ago by
Laura
★ 1.8k
10
votes
4
replies
2.7k
views
News:
Ensembl 77 is out
ensembl
updated 2.3 years ago by
Ram
44k • written 9.6 years ago by
Emily
23k
10
votes
0
replies
2.1k
views
News:
Pan-Cancer Analysis of RNA Binding Proteins in ~7000 tumor samples
Pan-Cancer
mutations
TCGA
RNA-seq
cancer-driver
updated 12 months ago by
Ram
44k • written 6.3 years ago by
lsp03yjh
▴ 860
10
votes
4
replies
1.0k
views
News:
Good morning
good
morning
updated 20 months ago by
Istvan Albert
100k • written 20 months ago by
Kevin Blighe
88k
10
votes
4
replies
1.8k
views
News:
3rd Berlin Summer School in NGS Data Analysis (2 seats just became available)
NGS
RNA-Seq
DNA-Seq
updated 12 months ago by
Ram
44k • written 5.3 years ago by
David Langenberger
11k
10
votes
1
reply
3.1k
views
News:
Ucsc: Dna Sequences In Web Pages Indexed By Bing.Com / Microsoft Research (All Phenotype And Literature Tracks)
web
ucsc
updated 14 months ago by
Ram
44k • written 10.3 years ago by
Pierre Lindenbaum
162k
10
votes
7
replies
2.9k
views
News:
Linux for Biologists e-book (free to read online)
linux
python
galaxy
conda
virtual-machine
2.6 years ago by
vimalkvn
▴ 320
10
votes
4
replies
1.3k
views
News:
RNA-Seq Data Analysis Workshop - Join us in Berlin, Germany from March 27-30, 2023!
NGS
transcriptomics
workshop
updated 14 months ago by
kng
▴ 30 • written 15 months ago by
David Langenberger
11k
10
votes
0
replies
2.9k
views
News:
Cfp: Camda 2013 Challenge: Big Data In Life Sciences
ngs
conference
updated 15 months ago by
Ram
44k • written 11.2 years ago by
okko.clevert
▴ 240
10
votes
2
replies
3.3k
views
News:
Biostars based Q&A for Bioconductor: http://support.bioconductor.org
RNA-Seq
bioconductor
updated 2.4 years ago by
Ram
44k • written 9.7 years ago by
Pierre Lindenbaum
162k
10
votes
7
replies
2.4k
views
News:
Free draft copy of book on bioinformatics tools
alignment
Assembly
RNA-seq
next-gen
updated 16 months ago by
Ram
44k • written 9.0 years ago by
ugly.betty77
★ 1.1k
10
votes
0
replies
3.4k
views
News:
1000 Genomes data on GRCh38
1000Genomes
GRCh38
alts
alignment
updated 21 months ago by
Ram
44k • written 8.6 years ago by
fairley
▴ 100
10
votes
1
reply
2.0k
views
News:
Run on 1st Berlin Summer School in NGS Data Analysis
DNA-Seq
RNA-Seq
NGS
updated 13 months ago by
Ram
44k • written 7.3 years ago by
David Langenberger
11k
9
votes
5
replies
3.7k
views
News:
SAMTOOLS 1.4 released
samtools
updated 12 months ago by
Ram
44k • written 7.2 years ago by
Pierre Lindenbaum
162k
9
votes
5
replies
3.1k
views
News:
The NIH Software Discovery Index | We invite your comments
NIH
software-catalog
updated 2.3 years ago by
Ram
44k • written 9.6 years ago by
Sean Davis
27k
9
votes
4
replies
1.6k
views
News:
Human Cell Atlas Data Coordination Platform Data Release Questionaire
RNA-Seq
updated 12 months ago by
Ram
44k • written 6.2 years ago by
Laura
★ 1.8k
9
votes
3
replies
3.3k
views
News:
New Human Genome Assembly (Grch38) Released
human-genome
assembly
updated 14 months ago by
Ram
44k • written 10.4 years ago by
Pierre Lindenbaum
162k
9
votes
0
replies
2.2k
views
News:
Commercial advertising on Biostars
meta
biostars
advertising
updated 14 months ago by
Ram
44k • written 9.7 years ago by
Istvan Albert
100k
9
votes
6
replies
2.2k
views
News:
No more hidden solutions in bioinformatics
precision-medicine
genome-sequencing
updated 16 months ago by
Ram
44k • written 9.0 years ago by
HG
★ 1.2k
9
votes
4
replies
2.5k
views
7 follow
News:
fastp 0.22 released, with new FASTQ deduplication feature.
fastp
updated 10 months ago by
Ram
44k • written 2.7 years ago by
chen
★ 2.5k
9
votes
4
replies
3.7k
views
News:
Conference Announcement - Camda 2013
conference
classification
updated 15 months ago by
Ram
44k • written 11.4 years ago by
okko.clevert
▴ 240
9
votes
3
replies
4.8k
views
News:
Bioinformatics Contest 2020. Call for problems
contest
updated 11 months ago by
Ram
44k • written 4.7 years ago by
alserg
▴ 930
9
votes
5
replies
8.8k
views
News:
A New Rest Based Api For Kegg: Kyoto Encyclopedia Of Genes And Genomes
kegg
api
updated 15 months ago by
Ram
44k • written 11.5 years ago by
wchknudt
▴ 50
9
votes
5
replies
10k
views
8 follow
News:
Online course: Learn Bioinformatics in 100 hours
biostars
online-course
updated 15 months ago by
Ram
44k • written 6.8 years ago by
Istvan Albert
100k
9
votes
2
replies
14k
views
News:
Bio-Linux 8 is now available
genome
rna-seq
alignment
Assembly
next-gen
updated 2.5 years ago by
Ram
44k • written 9.8 years ago by
rtliu
★ 2.2k
8
votes
0
replies
2.2k
views
News:
A Call To Create Listings Of The Best Review Papers
papers
updated 15 months ago by
Ram
44k • written 11.7 years ago by
Istvan Albert
100k
1,000 results • Page
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Recent Votes
Cellranger-multi : Demultiplexing and Analyzing 5’ Immune Profiling Libraries Pooled with Hashtags
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Random Access remote BAM files
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C: Converting narrowPeak to bed
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Answer: Does prokka work the same on forward and reverse complementary reads?
by
igmin
• 0
Prokka works the same on both forward and reverse complementary reads. It doesn't matter if your genetic sequences are in their original fo…
Comment: Construction of circos plot from WGS data
by
Anitha
▴ 10
Thank you for the information. But, I am still struggling like which data to use and how to process the input data to represent to build th…
Comment: Tools for chromosomal aneuploidy detection
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cmdcolin
★ 3.8k
is there any reason why you do not like tools based on read depths?
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Thank you for your reply! I followed your advice to convert to sparse matrix first but I got this error Error in Matrix::sparseMatrix(raw_…
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ericrkofman
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I can't find an hg38 version, and the old VCF seems to be of a different header format so I am having difficulty converting it to hg38 from…
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ATpoint
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Preferred if you have true biological replicates. Can still be combined with my subsetting strategy, like use 100x different cells for the …
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ATpoint
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```r set.seed(1) m = matrix(rnorm(100), nrow = 10) rownames(m) = 1:10 # normal ha = rowAnnotation(foo = anno_mark(at=1:nrow(m), labels=row…
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation
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Ram
44k
Please do not add answers unless you're actually answering the question. I've moved your post to a comment.
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation
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hannes.bongartz
• 0
I still cannot find a way. It seems to be an easy to solve issue and I was trying any possible combination with the aforementioned gp=gpar(…
Comment: What is a good way to do gene differentials in single cell data where one group
by
fracarb8
★ 1.6k
I would probably use a pseudobulk approach.
Comment: Error when looping over multiple columns in a data frame in R
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Jeremy
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`cutpoint_results[[col_name]]` adds each new cut point to the list entitled "cutpoint_results", while keeping the original column names fr…
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14k
Never use uncorrected p-values with RNASeq. Your PCA is suggesting that your sample groups are not very different, and the DEG tests con…
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82k
I would keep it transparent. Do DE by subsetting large to small group. Do that randomly many times, then either average stats or use some s…
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Without looking at the actual sequence for each genome, my guess is that the Echinobase reference just matches much more closely to the org…
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> It does not seem to be the longest transcript. Is it the canonical transcript? Longest == canonical. If you're looking for the transcrip…
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