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355 results • Page 3 of 8
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1
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716
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Forum: Open Project in Bioinformatics
genome
updated 11 months ago by 43k • written 3.7 years ago by ▴ 10
0
votes
2
replies
1.2k
views
Forum: Welcome to join our Wechat group for Bioinformatics!
single-cell ChIP-Seq genome algorithm RNA-Seq
updated 11 months ago by 43k • written 3.7 years ago by ▴ 160
12
votes
2
replies
3.0k
views
Forum: List of genome annotation tools (>140)
gene genome
updated 11 months ago by 43k • written 4.7 years ago by 8.6k
13
votes
7
replies
1.3k
views
Forum: Feedback for my python package to combine results from multiple classifiers
annotation protein python machine-learning
updated 11 months ago by 43k • written 3.7 years ago by ▴ 110
38
votes
17
replies
3.3k
views
7 follow
Forum: Why does bioinformatics use a special format like a BAM file instead of a database like SQLite?
sam bam samtools
updated 11 months ago by 43k • written 3.7 years ago by ▴ 250
60
votes
25
replies
5.8k
views
8 follow
Forum: Am I crazy, or are most published RNA-seq studies vastly underpowered?
sample-size statistical-power RNA-Seq
updated 11 months ago by 43k • written 3.8 years ago by ▴ 230
1
vote
1
reply
595
views
Forum: Bioinfo and Microbio
snp gene genome next-gen
updated 11 months ago by 43k • written 3.8 years ago by • 0
23
votes
11
replies
2.1k
views
9 follow
Forum: file and directory management best practices
file-management
updated 11 months ago by 43k • written 3.8 years ago by ▴ 140
1
vote
4
replies
1.8k
views
Forum: What do you want to learn about bioinformatics?
course education
updated 11 months ago by 43k • written 5.4 years ago by ▴ 120
2
votes
8
replies
1.7k
views
7 follow
Forum: Which tools do you miss?
software
updated 11 months ago by 43k • written 3.8 years ago by ▴ 110
3
votes
2
replies
1.2k
views
Forum: Preferred cloud environment for genomics.
next-gen-sequencing RNA-Seq alignment
updated 11 months ago by 43k • written 3.8 years ago by ▴ 10
1
vote
13
replies
2.8k
views
Forum: Bioinformatics computer upgrade help
computer
updated 11 months ago by 43k • written 3.9 years ago by ▴ 50
6
votes
5
replies
1.0k
views
Forum: Russian universities for the study of biomedicine
russian-university
updated 11 months ago by 43k • written 3.9 years ago by ▴ 30
22
votes
15
replies
9.0k
views
11 follow
Forum: RNASeq user experience with Novogene?
RNA-Seq
updated 12 months ago by 43k • written 5.9 years ago by ▴ 80
2
votes
9
replies
1.4k
views
Forum: 'No code' data manipulation tools for bioinformatics
software
updated 11 months ago by 43k • written 3.9 years ago by • 0
1
vote
2
replies
1.2k
views
Forum: Metagenomics Tutoring Opportunity
metagenomics microbial tutoring
updated 11 months ago by 43k • written 5.4 years ago by ▴ 30
23
votes
12
replies
2.0k
views
6 follow
Forum: Whole-Exome Analysis on a Mainstream Desktop PC
NGS whole-exome
updated 11 months ago by 43k • written 3.9 years ago by 11k
2
votes
9
replies
1.4k
views
Forum: Any good idea for bioinfo final presentation?
R
updated 11 months ago by 43k • written 4.0 years ago by • 0
5
votes
4
replies
1.2k
views
Forum: Consider CodeOcean or other solutions for runnable Biostars answers?
CodeOcean how-to meta
updated 11 months ago by 43k • written 4.0 years ago by 22k
0
votes
5
replies
1.1k
views
Forum: Advice for a start in Bioinformatics
R next-gen Python
updated 11 months ago by 43k • written 4.0 years ago by • 0
23
votes
18
replies
1.5k
views
Forum: Versioning of Blast DB and Reproducible Research
database blast reproducible-research
updated 11 months ago by 43k • written 4.0 years ago by ▴ 60
0
votes
0
replies
1.1k
views
Forum: ssDNA Aptamer structure prediction
aptamer selex
updated 11 months ago by 43k • written 4.0 years ago by • 0
0
votes
0
replies
791
views
Forum: Where can I find a one-year fellowship in bioinformatics?
Bioinformatics-Minor Postodoctoral-Fellowship
updated 11 months ago by 43k • written 4.0 years ago by • 0
22
votes
8
replies
2.0k
views
10 follow
Forum: Is there any online course for bioinformatics right now or in the next two or three months?
online-course mooc
updated 11 months ago by 43k • written 4.1 years ago by ▴ 50
21
votes
18
replies
1.8k
views
Forum: Is it safe to keep our data in github
github
updated 11 months ago by 43k • written 4.0 years ago by ▴ 70
3
votes
6
replies
2.2k
views
Forum: Choosing the appropriate test for differential analysis: Limma or Mann-Whitney (with BH correction)? Test for normality
R Shapiro-Wilk Limma Mann-Whitney
updated 11 months ago by 43k • written 4.0 years ago by ▴ 40
1
vote
7
replies
1.6k
views
Forum: Best online certificates / masters for Bioinformatics
learning certification courses online-training
updated 11 months ago by 43k • written 4.0 years ago by • 0
34
votes
22
replies
3.0k
views
11 follow
Forum: Have we failed as bioinformatician in this time of COVID-19
Bioinformatician COVID-19
updated 11 months ago by 43k • written 4.0 years ago by ▴ 10
0
votes
2
replies
1.4k
views
Forum: Alternative of Ingenuity Pathway Analysis - QIAGEN to filter Biomarkers
RNA-Seq
updated 11 months ago by 43k • written 4.0 years ago by • 0
7
votes
8
replies
2.4k
views
Forum: Virus Genome Length and GC Content of SARS-COV-2 causing COVID-19
sequence genome
updated 11 months ago by 43k • written 4.2 years ago by ▴ 30
1
vote
0
replies
591
views
Forum: New to bioinformatics
R Python
updated 11 months ago by 43k • written 4.0 years ago by ▴ 10
30
votes
16
replies
2.3k
views
9 follow
Forum: Which programming langauge shall I start as a beginner in Bioinformatics
programming-language single-cell
updated 11 months ago by 43k • written 4.1 years ago by • 0
0
votes
1
reply
2.2k
views
Forum: How's the bioinformatics engineering path? How to become a bioinformatics engineer?
machine-learning Bioinformatics-engineer
updated 11 months ago by 43k • written 4.0 years ago by ▴ 70
0
votes
2
replies
1.0k
views
Forum: Suffix Arrays: looking for an instructive algorithm of SA construction for teaching
suffix-arrays linear-time teaching algorithm
updated 11 months ago by 43k • written 4.0 years ago by 54k
0
votes
0
replies
748
views
Forum: make sense out of Whole Exome Sequencing on cancer cell lines
next-gen-sequencing Whole-Exome-Sequencing SNP
updated 11 months ago by 43k • written 4.0 years ago by ▴ 20
0
votes
2
replies
902
views
Forum: 1st-year grad student, plant biology lab, new to bioinformatics -- where to begin?
microarray plant-biology
updated 11 months ago by 43k • written 4.1 years ago by • 0
0
votes
0
replies
834
views
Forum: Annotation for WGBS
next-gen
updated 11 months ago by 43k • written 4.1 years ago by ▴ 70
7
votes
9
replies
1.1k
views
Forum: DEG analysis when not replicates are available
NOISeq RNA-Seq edgeR
updated 11 months ago by 43k • written 4.1 years ago by ★ 5.1k
5
votes
5
replies
946
views
Forum: What will happen to data analysts after COVID-19 pandemic
COVID
updated 11 months ago by 43k • written 4.1 years ago by ★ 4.3k
2
votes
6
replies
1.2k
views
Forum: Would love to hear from you re: which bionformatics resources could use an improvement in their interface.
seq database gene prot
updated 11 months ago by 43k • written 4.1 years ago by • 0
10
votes
7
replies
2.0k
views
Forum: Is trimming always better?
RNA-Seq QC trimmomatic trimming
updated 11 months ago by 43k • written 4.9 years ago by ▴ 330
2
votes
4
replies
1.3k
views
Forum: Transitioning from Wet Lab to Computational Biology as a PhD Student/Surgeon
RNA-Seq sequencing
updated 11 months ago by 43k • written 4.1 years ago by ▴ 10
7
votes
5
replies
957
views
Forum: scRNA rising in popularity, what comes next?
scRNA
updated 11 months ago by 43k • written 4.1 years ago by ▴ 20
12
votes
12
replies
1.4k
views
7 follow
Forum: Who qualify as a world class bioinformatician as seen in job ads
world-class bioinformatician qualification
updated 11 months ago by 43k • written 4.1 years ago by • 0
29
votes
18
replies
2.8k
views
12 follow
Forum: what are the big questions in bioinformatics field nowadays
genome
updated 11 months ago by 43k • written 4.2 years ago by ▴ 20
6
votes
5
replies
1.1k
views
Forum: A free temporary HPC service for bioinformatic analysis
HPC
updated 11 months ago by 43k • written 4.2 years ago by ▴ 340
5
votes
6
replies
1.1k
views
Forum: COVID19 testing - can we/should we use NGS?
NGS covid19 diagnostics
updated 11 months ago by 43k • written 4.2 years ago by ★ 1.4k
6
votes
5
replies
7.8k
views
Forum: Converting GFF to GTF
GTF GFF
updated 11 months ago by 43k • written 4.2 years ago by 8.6k
4
votes
5
replies
1.1k
views
Forum: A silly question about journal clubs
journal-club challenge
updated 11 months ago by 43k • written 4.2 years ago by ▴ 280
31
votes
41
replies
2.8k
views
12 follow
Forum: Question regarding journal publications
publications journals
updated 11 months ago by 43k • written 4.2 years ago by ▴ 40
355 results • Page 3 of 8
Recent Votes
A: How is the design in DESeq2 work?
Error in CIBERSORTx ($ operator is invalid for atomic vectors)
Answer: RNAseq coverage vs depth for transcript isoform expression?
constructing pangenome through psvcp
Differential Expression with limma: Contrast and Design Matrix, combinatorial approach valid?
Differential Expression with limma: Contrast and Design Matrix, combinatorial approach valid?
Answer: RNAseq coverage vs depth for transcript isoform expression?
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Recent Awards • All
Popular Question to synat.keam ▴ 100
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Recent Replies
Comment: Error in CIBERSORTx ($ operator is invalid for atomic vectors) by nguyenn6 • 0
did you ever figure it out? i'm having the same issue.
Comment: Traveler with Infernal mapping failed by anton.i.petrov • 0
Hi Larissa! I am the lead developer of R2DT and I've just noticed this question. Could you please email help@r2dt.bio with your input seque…
Comment: constructing pangenome through psvcp by analyst ▴ 50
Fixed the issue by updating nucmer version.
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU by GenoMax 142k
Can you create a small test database (`makeblastdb`) from your query file and try to run the search against the same file and see if that w…
Comment: calculating genomic coverage/ base overlap in R by 1769mkc ★ 1.2k
you can `dput(head(df)` for the both the data frame so that other can test for possible solutions
Comment: Broad and Narrow peaks by ATpoint 82k
What is your question? It's unclear.
Comment: Help with Biopython for Beginner by Joe 21k
One question before offering more solutions: are you trying to learn Python with this as an example problem, or are you trying to find the …
Answer: RNAseq coverage vs depth for transcript isoform expression? by Gordon Smyth ★ 7.2k
See the exploration of isoform estimation precision vs read length and sequencing depth in our paper: https://doi.org/10.1093/nar/gkad1167.…
Comment: How to handle duplicated genes in TCGA data? by txema.heredia ▴ 130
Why does the tool require gene symbols and not ensembl ids? Is it retrieving information from somewhere else? If so, your best bet is to fi…
Comment: how to treat the replicates while performing WGCNA by mavy ▴ 10
Thank you so much for your response . Really appreciate it. I will try the way you mentioned and will get back if I have any query
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU by hophuquy0944 • 0
i have the same error, i used high performance computer, here is my code to set memory. srun --nodes=1 --ntasks=1 --cpus-per-task=24 -…
Comment: Overlapping Ranges within Granges object by Alex Reynolds 35k
Yes, `bedmap` will perform operations on one or two BED files.
Comment: B allele frequency (BAF) by aidangcruickshank ▴ 10
Apologies for resurrecting this post, but any idea what that functions "regions" paramater takes? Would it be a GRanges object? The documen…
Comment: How to handle duplicated genes in TCGA data? by Ngrin • 0
Thanks @txema.heredia.The tool I am going to use only accepts gene symbols. This is the reason. So I cannot use ENS IDs.
Answer: Design for complex RNA-Seq experiment using Deseq2 by swbarnes2 14k
This is a rather small experiment, I don't know that you can establish a meaningful baseline for each patient with a single pre sample, and…
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