This is a test version of Biostars. For the public version, visit https://www.biostars.org.
0 votes
8 replies
6.1K views
Adjust width of annotations in pheatmap
r heatmap
updated by Kevin Blighe Kevin Blighe • written by divya.nandakumar • divya.nandakumar
0 votes
6 replies
1.9K views
How to View Peaks from ChIP-seq Data generated using old reference genome (hg18)
r peak chip-seq
updated by Kevin Blighe Kevin Blighe • written by DareDevil DareDevil
0 votes
3 replies
1.2K views
HDOCK Server Error!
hdock docking
updated by Kevin Blighe Kevin Blighe • written by Jannatul Ferdous • Jannatul Ferdous
0 votes
3 replies
1.0K views
Feature selection for multi-class classification problem.
feature m3drop r python selection
updated by Kevin Blighe Kevin Blighe • written by Shakunthala Natarajan • Shakunthala Natarajan
0 votes
9 replies
2.4K views
Feature Counts - potential bug with outfile.jcounts
featurecounts
updated by Kevin Blighe Kevin Blighe • written by chrisk • chrisk
0 votes
6 replies
2.2K views
How to remove duplicated SNPs based on MAF with Plink?
snps plink2 duplication maf
updated by Kevin Blighe Kevin Blighe • written by giulia.trauzzi • giulia.trauzzi
0 votes
2 replies
1.4K views
How to create modified basecalling dataset with nanopore data with an ambiguous motif sequence?
dorado nanopore remora
updated by Kevin Blighe Kevin Blighe • written by swim1128 • swim1128
0 votes
3 replies
1.7K views
How to visualize shared pathways between ORA (enrichment) results?
visualization ora pathways enrichment
updated by Kevin Blighe Kevin Blighe • written by Picasa Picasa
0 votes
19 replies
3.7K views
Interpretation of logFC in limma-voom contrasts
limma logfc limma-voom
written by donan • donan
0 votes
2 replies
1.1K views
miRNA analysis
mirna vescicles extracellular
updated by Kevin Blighe Kevin Blighe • written by deniselavezzari • deniselavezzari
0 votes
3 replies
1.7K views
HLA alignment, approximation and frequencies
fastq
updated by Kevin Blighe Kevin Blighe • written by oumo • oumo
0 votes
2 replies
1.5K views
Confusion regarding Euclidean distance measures of dissimilarity
rnaseq r edger
updated by Kevin Blighe Kevin Blighe • written by mohsamir2016 • mohsamir2016
0 votes
4 replies
6.6K views
Extract transcript fasta using gff
fasta gff
updated by Bourumir • Bourumir • written by boczniak767 boczniak767
0 votes
1 reply
918 views
MDS file NaN values
missing genome mds
updated by Kevin Blighe Kevin Blighe • written by am29 • am29
0 votes
2 replies
2.9K views
How to decide the normalization method for targeted metabolomics data ?
lc-ms normalization r metabolomics targeted-metabolomics
written by Luwell • Luwell
0 votes
1 reply
3.5K views
Best Practice for Group Composition Plots in Phyloseq
phyloseq microbiome relative-abundance
updated by Kevin Blighe Kevin Blighe • written by bioinfo bioinfo
0 votes
3 replies
1.8K views
Sea of genomic wide significant hits in GWAS (Plink2) and Absence when using regenie
genome-wide gwas snps regenie plink2
updated by Kevin Blighe Kevin Blighe • written by a.papadam • a.papadam
0 votes
4 replies
2.5K views
Can a spiked-in negative control still be considered a true negative control in 16S sequencing?
sequencing
updated by Kevin Blighe Kevin Blighe • written by Vojtěch • Vojtěch
0 votes
1 reply
905 views
useing lncHUB2 with R
genelist lnchub2 rprograming lncrnas
updated by Kevin Blighe Kevin Blighe • written by mastoreh • mastoreh
0 votes
1 reply
803 views
interpretation of the results obtained with digital PCR
dpcr
updated by Kevin Blighe Kevin Blighe • written by Lorenzo • Lorenzo
0 votes
17 replies
4.4K views
A question of NGS requirement
storage rnaseq
written by zizigolu zizigolu
0 votes
2 replies
873 views
Forum: How can I start learning bioinformatics? Any recommended beginner-friendly resources?
learning-resources beginners bioinformatics
written by dheeraj • dheeraj
0 votes
1 reply
946 views
R code for getting TFs from ChEA2024 by gene list
tf chea2024 rprograming genelist
updated by Kevin Blighe Kevin Blighe • written by mastoreh • mastoreh
2 votes
3 replies
1.9K views
install SCP problem
scp
updated by Kevin Blighe Kevin Blighe • written by Andy • Andy
0 votes
2 replies
1.2K views
exploring scRNA with only one sample per condition
scrnaseq exploring
updated by Kevin Blighe Kevin Blighe • written by Mery • Mery
0 votes
3 replies
1.7K views
Doubt on protein preparation before Vina
protein docking vina doubt
updated by Kevin Blighe Kevin Blighe • written by Ria • Ria
0 votes
7 replies
1.8K views
Upstream (5′) Coverage Depletion Observed in IGV
igv ont
updated by Kevin Blighe Kevin Blighe • written by safeassli • safeassli
1 vote
5 replies
2.5K views
Weird edgeR normalization results for one tissue
edger normalization rnaseq
updated by Kevin Blighe Kevin Blighe • written by imetrev • imetrev
0 votes
1 reply
1.2K views
Optimal way of running sysvi / scanvi
single-cell scanvi integration
updated by Kevin Blighe Kevin Blighe • written by LChart LChart
0 votes
1 reply
1.4K views
Rescaling after relative abundance filtering of gut microbiome data
microbiome gut network
updated by Kevin Blighe Kevin Blighe • written by yesquokkan • yesquokkan
0 votes
5 replies
1.5K views
lollipop plot showing DNA sequence
mutation plot lollipop
updated by Kevin Blighe Kevin Blighe • written by varga.luca • varga.luca
0 votes
6 replies
1.8K views
Obtaining DESeq2 LFC values for Loadings of Principal Components
rnaseq model deseq2 design pca
written by Nishant • Nishant
0 votes
1 reply
630 views
Exploring cross-cancer similarity using SNP or variant data with deep learning
tcga deep-learning snp cancer
updated by Kevin Blighe Kevin Blighe • written by Pranava • Pranava
0 votes
3 replies
1.2K views
Batch correction with ComBat for samples from multiple sampling sites
batch-correction combat
updated by Kevin Blighe Kevin Blighe • written by bobia9193 • bobia9193
0 votes
2 replies
667 views
Autosome/ sex chromosome assembly error
genomics analysis sexchromosome tools
updated by Kevin Blighe Kevin Blighe • written by Megan • Megan
0 votes
1 reply
1.4K views
How should I interpret GSEA results for the C6: Oncogenic Signatures collection (e.g., MYC_UP.V1_DN)?
rna-seq oncogenic msigdb gsea pathways
updated by Kevin Blighe Kevin Blighe • written by Laura • Laura
0 votes
2 replies
677 views
Polyadenylation-PAS sites APAlyzer
r apalyzer
updated by Ram Ram • written by aj123 aj123
0 votes
3 replies
1.5K views
Mixed marker expression in Xenium data
clustering xenium explorer
updated by Kevin Blighe Kevin Blighe • written by Song • Song
0 votes
3 replies
999 views
Help interpreting antiSMASH BGCs for EPA (eicosapentaenoic acid) biosynthesis
biosynthetic_gene_cluster secondary_metabolism pks heterologous_expression
updated by Kevin Blighe Kevin Blighe • written by 城玮 • 城玮
0 votes
1 reply
683 views
reference genome into chromosomes but annotation only at scaffolds level
reference rnaseq genome scaffolds annotation
updated by Kevin Blighe Kevin Blighe • written by murheisa • murheisa
0 votes
0 replies
510 views
News: Course: Multimodal AI for Systems Biology (Online, 2–6 March 2026)
genomics multimodalai multiomics
written by Physalia-courses Physalia-courses
0 votes
4 replies
1.4K views
cufflinks- cuffquant issue
cufflinks
updated by colindaven colindaven • written by soyeon • soyeon
0 votes
1 reply
509 views
Set parameters of fastsimcoal2.
fastsimcoal2
updated by GenoMax GenoMax • written by haoma • haoma
0 votes
1 reply
582 views
Is it possible to reverse a VST transformation to obtain original counts?
bulkrnaseq vst-transformed_matrix
updated by ATpoint ATpoint • written by arashsltni • arashsltni
0 votes
16 replies
7.0K views
Data retrieval from GEO
microarray geo
updated by Dimitris Grigoriadis • Dimitris Grigoriadis • written by lessismore lessismore
11 votes
2 replies
24K views
Tutorial: How to download GEO data Quickly and easily
geo rna-seq r data-mining
updated by Dimitris Grigoriadis • Dimitris Grigoriadis • written by Novogene • Novogene
0 votes
2 replies
1.3K views
News: Only 8 places left - 1st Berlin Winter School in RNA-Seq Data Analysis (Dec 8-11, 2025)
transcriptomics rna-seq expression differential
written by ecSeq Bioinformatics • ecSeq Bioinformatics
0 votes
0 replies
447 views
News: Workshop: Virtual Genome Annotation, November 18–20
genomeannotation workshop uconn
written by zsc25001 • zsc25001
0 votes
5 replies
1.7K views
hisat2 error-Paired end reads not equal or lack of RAM/disk space?
end fastq paired
updated by ATpoint ATpoint • written by aj123 aj123
7 votes
17 replies
19K views
Forum: Is Software Development a key part of Bioinformatics?
software-development
updated by Анна • Анна • written by xinuke • xinuke
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