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0 votes
1 reply
673 views
Appropriate normalization of skewed data for "Translating multiomics single-cell data" with MOSCOT
normalization biostatistics scrna-seq anndata moscot
updated by Kevin Blighe Kevin Blighe • written by npont • npont
0 votes
5 replies
1.7K views
Problems with PacBio's Improved Phased Assembler (IPA)
pacbio hifi assembly genome
updated by Kevin Blighe Kevin Blighe • written by Panos Panos
0 votes
2 replies
758 views
Passing .bed files to nQuire create command
bed alignment nquire ploidy
written by akoontz11 • akoontz11
2 votes
3 replies
1.3K views
Help me finding Resources for integrating clinical data with omics (survival, hazard, time-to-event analysis)
clinical transcriptomics proteomics bioconductor
updated by Kevin Blighe Kevin Blighe • written by WUSCHEL WUSCHEL
0 votes
14 replies
3.3K views
Forum: How can a graduate student start offering bioinformatics pipeline development as freelance work for wet lab researchers?
snakemake career-advice nextflow
written by DdogBoss • DdogBoss
0 votes
1 reply
872 views
Standard QC and EDA for Bulk RNA-seq
single-cell rna-seq python anndata bulk
updated by i.sudbery i.sudbery • written by AlexStar • AlexStar
0 votes
4 replies
1.1K views
RNASeq QC and STAR results confused
rna-seq star quality control
updated by lieven.sterck lieven.sterck • written by shafi98 • shafi98
0 votes
3 replies
859 views
ChIP-Seq with one poor replicate, one good
chip-seq
updated by Ian Ian • written by graeme.thorn graeme.thorn
0 votes
0 replies
650 views
Job: Research Assitant (RA) position at University of Macau Faculty of Health Science
drug-discovery omics virtual-screening machine-learning artificial-intelligence
written by Nitin Narwade Nitin Narwade
0 votes
0 replies
679 views
Job: Postdoc Position at the Faculty of Health Science , University of Macau, Macau
drug-discovery omics virtual-screening machine-learning artificial-intelligence
written by Nitin Narwade Nitin Narwade
0 votes
0 replies
618 views
Job: Postdoc in Computational Biology for Ovarian Cancer Research
cancer ovarian biology ai computational
written by avinashd.sahu • avinashd.sahu
1 vote
0 replies
649 views
News: RNA-seq Certification- Winter Registration Now Open
singlecell bulkrnaseq certification rnaseq
updated by GenoMax GenoMax • written by Nicole • Nicole
1 vote
2 replies
8.9K views
How to convert genetic coordinates to HGVS format?
next-gen snp hgvs
updated by Nina • Nina • written by lmelnik113 • lmelnik113
0 votes
4 replies
1.3K views
Checkm results differ from database info
checkm
updated by Kevin Blighe Kevin Blighe • written by alevbozan18 • alevbozan18
0 votes
3 replies
1.9K views
limmaFit error when comparing TCGA RNA-Seq data
r tcga limma
updated by Kevin Blighe Kevin Blighe • written by vernonlim98 • vernonlim98
0 votes
3 replies
2.2K views
installation of package ‘DESeq2’ had non-zero exit status
deseq2
updated by Kevin Blighe Kevin Blighe • written by Sarita • Sarita
0 votes
2 replies
1.0K views
Need Help : JGI IMG Bulk Download
jgi
updated by Kevin Blighe Kevin Blighe • written by Ananaya • Ananaya
0 votes
3 replies
1.0K views
intersect question of H3k4me3, H3k27Ac, H3k27me3, calculating the consensus
histonemarks peakcalling intersect
written by theodore theodore
0 votes
1 reply
768 views
Ribo-seq analysis workflow
ribo seq single end
updated by Kevin Blighe Kevin Blighe • written by mansiparihar13 • mansiparihar13
0 votes
9 replies
2.4K views
Inferring input data suitability (quality and quantity) from PCA for machine learning classification problem.
outliers datasets pca classification quality
written by Shakunthala Natarajan • Shakunthala Natarajan
0 votes
9 replies
1.9K views
GWAS Manhattan plot shows no SNPs near centromeres — is this result reliable?
rmvp snp gwas
written by straywilddog • straywilddog
0 votes
2 replies
871 views
How to add zinc for autodockZn
docking zinc autodockzn metalloprotein
written by Ria • Ria
0 votes
1 reply
648 views
News: Virtual Genome Annotation Workshop (Nov 18-20, UConn CBC)
genomics annotation workshop
updated by Kevin Blighe Kevin Blighe • written by bioadam • bioadam
0 votes
0 replies
538 views
News: RNA-seq Data Analysis for Beginners course - online, 10-19 February 2026
ngs rnaseq
written by Physalia-courses Physalia-courses
0 votes
4 replies
1.9K views
R code for getting miRNAs from miRTarBase and TargetScan by gene list
mirtarbase genelist rcode targetscan
updated by Kevin Blighe Kevin Blighe • written by mastoreh • mastoreh
0 votes
4 replies
1.7K views
Germline and somatic mutations TCGA (GDC Data Portal)
germline somatic tcga mutation
written by Charlotte Stubbe • Charlotte Stubbe
0 votes
2 replies
1.4K views
NOVOPlasty assembly fails with “INVALID SEED” using first read as seed
mitochondria assembly genome novoplasty
updated by Kevin Blighe Kevin Blighe • written by Buddha • Buddha
0 votes
1 reply
741 views
Phylogeny between monocot and eudicot
phylogeny
updated by Kevin Blighe Kevin Blighe • written by Mohammed • Mohammed
0 votes
1 reply
1.6K views
Seurat/Signac multiome analysis filtering on nCounts instead of nFeatures
10x signac seurat multiome
updated by Kevin Blighe Kevin Blighe • written by yura.grabovska • yura.grabovska
0 votes
1 reply
990 views
Understanding FEELnc Tool Results and lncRNA Functional Analysis
feelnc tool
updated by Kevin Blighe Kevin Blighe • written by Mian Numan • Mian Numan
0 votes
3 replies
1.4K views
Reasonable number of SNPs in a bacterial genome.
snp bacteria
updated by Kevin Blighe Kevin Blighe • written by yesquokkan • yesquokkan
1 vote
0 replies
604 views
News: In Memoriam: Atul J. Butte (1969-2025), Pioneer in Bioinformatics and Personalized Medicine
genetics atulbutte
written by Kevin Blighe Kevin Blighe
0 votes
5 replies
1.5K views
vg dist on (large) graph runtime?
vg
updated by GenoMax GenoMax • written by kingcohn • kingcohn
0 votes
3 replies
1.5K views
Haploview LD plot unespected results
haploview snps
updated by Kevin Blighe Kevin Blighe • written by chiuni2308 • chiuni2308
0 votes
3 replies
1.7K views
Cells from normal sample were incorrectly classified as tumor cells using copykat
copykat scrna-seq cell tumor
updated by Kevin Blighe Kevin Blighe • written by tujuchuanli tujuchuanli
2 votes
0 replies
697 views
News: Biostars Newsletter [November 11, 2025]
newsletter
written by Kevin Blighe Kevin Blighe
0 votes
7 replies
12K views
Would Anyone Share The Metabric Breast Cancer Data With Me Please?
metabric
updated by Ram Ram • written by koukougogo • koukougogo
0 votes
2 replies
952 views
Structural variant database
variants cnv database structural
written by Ali • Ali
0 votes
2 replies
1.2K views
Configuration file for DSP WTA
dsp
updated by GenoMax GenoMax • written by Petesview • Petesview
0 votes
2 replies
1.6K views
Homology Directed Repair in Crispr-Cas9 gene editing/deletion
crispr editing cas9 gene
updated by Kevin Blighe Kevin Blighe • written by hiname • hiname
0 votes
1 reply
996 views
Choosing which transposable element annotation to use for analysis
transposable bulk_rna-seq element
updated by Kevin Blighe Kevin Blighe • written by rejflstrasni • rejflstrasni
1 vote
5 replies
1.9K views
Read spatial data from GSM8557976 using Seurat
spatial data seurat
updated by fracarb8 fracarb8 • written by tujuchuanli tujuchuanli
0 votes
3 replies
1.2K views
Data Mining for Chip_seq analysis
cancer chip_seq prostate
updated by Kevin Blighe Kevin Blighe • written by tabasumughal • tabasumughal
0 votes
7 replies
3.2K views
Why do I observe a large number of “Unassigned_NoFeatures” reads in featureCounts after standard mouse RNA-seq workflow?
rna-seq seq ngs rna
updated by Kevin Blighe Kevin Blighe • written by 城玮 • 城玮
0 votes
2 replies
1.5K views
How to use "simulated playback" feature in MinKNOW
ont nanopore sequencing selective
updated by Kevin Blighe Kevin Blighe • written by matt_arnold_bio • matt_arnold_bio
0 votes
6 replies
3.1K views
Calculating pi and phi from VCF files on R
snp vcf r phi pi
updated by Michael Dondrup Michael Dondrup • written by maho4822 • maho4822
0 votes
5 replies
2.0K views
I cannot install anaconda on ubuntu 22.04
ubuntu anaconda conda
updated by Kevin Blighe Kevin Blighe • written by Omar • Omar
0 votes
16 replies
4.3K views
Single Cell RNA Seq
sctransform harmony scrnaseq seurat
updated by Kevin Blighe Kevin Blighe • written by scRNA2023 • scRNA2023
0 votes
2 replies
1.2K views
Pisces doesn't like high-quality reads when there is a soft-clip affecting the full read.
pisces
updated by Kevin Blighe Kevin Blighe • written by ManuelDB ManuelDB
0 votes
6 replies
3.0K views
Log2 transformation is well used, but is there a good paper that can be used as reference ?
tpm log2-transformation r
updated by Kevin Blighe Kevin Blighe • written by AlexStar • AlexStar
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