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gaelgarcia
gaelgarcia
Reputation:
280
Joined:
11.6 years ago
Last seen:
8.2 years ago
Location:
UK
Latest posts by user
1 vote
1 reply
1 view
Comment: C: Converting VCF to PLINK .bed binary fileset for pedigree checking with KING: How
written by gaelgarcia gaelgarcia
0 votes
2 replies
1 view
Comment: C: Converting VCF to PLINK .bed binary fileset: How do the different tools availabl
written by gaelgarcia gaelgarcia
0 votes
0 replies
1 view
Comment: C: retrospective trio analysis from WGS SNPs
written by gaelgarcia gaelgarcia
0 votes
0 replies
1 view
Comment: C: get build 37 positions from dbSNP rsIDs
written by gaelgarcia gaelgarcia
8 votes
23 replies
64K views
Converting VCF to PLINK .bed binary fileset to check for pedigree errors with KING: How do conversion tools make the PLINK .fam file, without asking for family relationships a priori?
plink vcf fam gatk vcftools
updated by Kevin Blighe Kevin Blighe • written by gaelgarcia gaelgarcia
0 votes
0 replies
1 view
Comment: C: Is there a easy to use GATK pipeline for SNP calling?
written by gaelgarcia gaelgarcia
0 votes
1 reply
1 view
Comment: C: SNP panel interrogated by KING for kinship estimation?
written by gaelgarcia gaelgarcia
0 votes
1 reply
1 view
Comment: C: Checking kinship coefficients and relationships and comparing genotyping data to
written by gaelgarcia gaelgarcia
0 votes
1 reply
1 view
Comment: C: Checking kinship coefficients and relationships and comparing genotyping data to
written by gaelgarcia gaelgarcia
0 votes
0 replies
1 view
Comment: C: Negative IBD values
written by gaelgarcia gaelgarcia
0 votes
1 reply
1 view
Comment: C: retrospective trio analysis from WGS SNPs
written by gaelgarcia gaelgarcia
0 votes
3 replies
2.1K views
SNP panel interrogated by KING for estimating kinship?
king snp kinship gwas
written by gaelgarcia gaelgarcia
1 vote
0 replies
1 view
Comment: C: PI_HAT and Z-values for relationships (PLINK IBD calculation)
written by gaelgarcia gaelgarcia
0 votes
0 replies
1 view
Comment: C: Download full list of SNPs and their coordinates in hg38
written by gaelgarcia gaelgarcia
0 votes
0 replies
1 view
Comment: C: List Of Dbsnp Rsids And Their Positions
written by gaelgarcia gaelgarcia
0 votes
1 reply
1 view
Comment: C: get build 37 positions from dbSNP rsIDs
written by gaelgarcia gaelgarcia
0 votes
2 replies
1 view
Comment: C: Download full list of SNPs in hg38
written by gaelgarcia gaelgarcia
3 votes
17 replies
34K views
Download full list of SNPs and their coordinates in hg38
snp hg38 snpsnap dbsnp population genetics
updated by krassowski.michal krassowski.michal • written by gaelgarcia gaelgarcia
0 votes
0 replies
2 views
Comment: C: Pedigree from coefficients of relatedness
written by gaelgarcia gaelgarcia
1 vote
2 replies
3.0K views
Tools to check consistency between VCF genotypes and pedigree-stated sex and family relationships
snp gatk vcf king plink
updated by chrchang523 chrchang523 • written by gaelgarcia gaelgarcia
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